miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8211 3' -55.4 NC_001978.2 + 35645 0.68 0.486178
Target:  5'- -uCGCGccgACGcUCAgggGCGCCGUCuccGGCu -3'
miRNA:   3'- uuGCGCua-UGC-AGUa--CGCGGCAG---CCG- -5'
8211 3' -55.4 NC_001978.2 + 41192 0.68 0.475799
Target:  5'- cAACGCugcggcgaaGAUGCGUCGUGCuauCCGUaaGGCa -3'
miRNA:   3'- -UUGCG---------CUAUGCAGUACGc--GGCAg-CCG- -5'
8211 3' -55.4 NC_001978.2 + 3696 0.69 0.435442
Target:  5'- uACGCGGUgcGCGUUGUcGaCGCCGgaguuagCGGCa -3'
miRNA:   3'- uUGCGCUA--UGCAGUA-C-GCGGCa------GCCG- -5'
8211 3' -55.4 NC_001978.2 + 24563 0.69 0.425664
Target:  5'- cAAUGCGuu-CGUCGgcgGCGUCaugGUCGGCa -3'
miRNA:   3'- -UUGCGCuauGCAGUa--CGCGG---CAGCCG- -5'
8211 3' -55.4 NC_001978.2 + 20360 0.7 0.397135
Target:  5'- --aGCGAaGCGUguUGCGgugcuUCGUCGGCa -3'
miRNA:   3'- uugCGCUaUGCAguACGC-----GGCAGCCG- -5'
8211 3' -55.4 NC_001978.2 + 37514 0.7 0.369864
Target:  5'- uGCGCGA-GCGUCGUcUGUcuuCGUCGGCg -3'
miRNA:   3'- uUGCGCUaUGCAGUAcGCG---GCAGCCG- -5'
8211 3' -55.4 NC_001978.2 + 8997 0.7 0.369864
Target:  5'- -cUGCGGgugGCGcUAU-CGCCGUCGGCa -3'
miRNA:   3'- uuGCGCUa--UGCaGUAcGCGGCAGCCG- -5'
8211 3' -55.4 NC_001978.2 + 28938 0.7 0.367208
Target:  5'- aGGCGCGAaGCGcgaccggaagguguUCAaggGCGCCGgauUCGGCa -3'
miRNA:   3'- -UUGCGCUaUGC--------------AGUa--CGCGGC---AGCCG- -5'
8211 3' -55.4 NC_001978.2 + 34288 0.71 0.343902
Target:  5'- -uCGCGuUGCGcUCA-GCGUgGUCGGCa -3'
miRNA:   3'- uuGCGCuAUGC-AGUaCGCGgCAGCCG- -5'
8211 3' -55.4 NC_001978.2 + 25243 0.72 0.311369
Target:  5'- cACGgGcgACGUCGUcaGCuCCGUCGGCc -3'
miRNA:   3'- uUGCgCuaUGCAGUA--CGcGGCAGCCG- -5'
8211 3' -55.4 NC_001978.2 + 21469 0.72 0.311369
Target:  5'- --gGCG-UGCGUCu--UGCCGUCGGCg -3'
miRNA:   3'- uugCGCuAUGCAGuacGCGGCAGCCG- -5'
8211 3' -55.4 NC_001978.2 + 17862 0.72 0.296001
Target:  5'- aAACGCGGcauagUugGUCGUGuCGgCGUCGGa -3'
miRNA:   3'- -UUGCGCU-----AugCAGUAC-GCgGCAGCCg -5'
8211 3' -55.4 NC_001978.2 + 22342 0.73 0.274065
Target:  5'- gGAC-CGGUccgGCGUCggGuUGCCGUCGGCg -3'
miRNA:   3'- -UUGcGCUA---UGCAGuaC-GCGGCAGCCG- -5'
8211 3' -55.4 NC_001978.2 + 4249 0.73 0.267048
Target:  5'- cGCGUGAgcuuCGUUu--CGCCGUCGGCa -3'
miRNA:   3'- uUGCGCUau--GCAGuacGCGGCAGCCG- -5'
8211 3' -55.4 NC_001978.2 + 31736 0.73 0.25345
Target:  5'- cGACGCa--AUGUCAUaaaggGCGUCGUCGGCg -3'
miRNA:   3'- -UUGCGcuaUGCAGUA-----CGCGGCAGCCG- -5'
8211 3' -55.4 NC_001978.2 + 34240 1.1 0.000581
Target:  5'- cAACGCGAUACGUCAUGCGCCGUCGGCg -3'
miRNA:   3'- -UUGCGCUAUGCAGUACGCGGCAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.