miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8211 5' -57.1 NC_001978.2 + 28351 0.66 0.514089
Target:  5'- cGAGCCcgGCGCguUGCAUGuACGCGCa-- -3'
miRNA:   3'- -CUCGG--UGCGacAUGUGC-UGCGCGcuu -5'
8211 5' -57.1 NC_001978.2 + 35720 0.66 0.514089
Target:  5'- cGGCCACGCUGc-CGCGcCaUGCGAAg -3'
miRNA:   3'- cUCGGUGCGACauGUGCuGcGCGCUU- -5'
8211 5' -57.1 NC_001978.2 + 26340 0.66 0.503426
Target:  5'- gGAGUCGCGCg--GCuucaccaugACGACGCGCa-- -3'
miRNA:   3'- -CUCGGUGCGacaUG---------UGCUGCGCGcuu -5'
8211 5' -57.1 NC_001978.2 + 648 0.66 0.482397
Target:  5'- -uGCUgaACGCggcGUACACGGCGCGgGu- -3'
miRNA:   3'- cuCGG--UGCGa--CAUGUGCUGCGCgCuu -5'
8211 5' -57.1 NC_001978.2 + 2713 0.67 0.460785
Target:  5'- -cGCCguucacgGCGCUGUG-AUGugGCGUGAAg -3'
miRNA:   3'- cuCGG-------UGCGACAUgUGCugCGCGCUU- -5'
8211 5' -57.1 NC_001978.2 + 41152 0.67 0.45168
Target:  5'- aGAGCCAUGCgaa--GCGGCGUGCu-- -3'
miRNA:   3'- -CUCGGUGCGacaugUGCUGCGCGcuu -5'
8211 5' -57.1 NC_001978.2 + 3547 0.67 0.448667
Target:  5'- -uGCCggGCGCUGUgguugagguaccggGCACGAUGaGCGAAg -3'
miRNA:   3'- cuCGG--UGCGACA--------------UGUGCUGCgCGCUU- -5'
8211 5' -57.1 NC_001978.2 + 29414 0.67 0.431807
Target:  5'- gGGGCCGguccuggggguCGCUGUaugGCGcCGACGUGUGAc -3'
miRNA:   3'- -CUCGGU-----------GCGACA---UGU-GCUGCGCGCUu -5'
8211 5' -57.1 NC_001978.2 + 11294 0.67 0.412454
Target:  5'- cGGUCACGCUgacgcuugagGUAUACGG-GCGCGAc -3'
miRNA:   3'- cUCGGUGCGA----------CAUGUGCUgCGCGCUu -5'
8211 5' -57.1 NC_001978.2 + 3163 0.68 0.401103
Target:  5'- cGAGCCGCcccgcuuGCUGUACgugcucaGCGGCaGCGUGGc -3'
miRNA:   3'- -CUCGGUG-------CGACAUG-------UGCUG-CGCGCUu -5'
8211 5' -57.1 NC_001978.2 + 21524 0.68 0.393647
Target:  5'- -cGCUgAgGCUGUACGCGACGCcUGAGc -3'
miRNA:   3'- cuCGG-UgCGACAUGUGCUGCGcGCUU- -5'
8211 5' -57.1 NC_001978.2 + 40540 0.69 0.349133
Target:  5'- cGGGUgACGCUGUGaugaaGugGCGUGAAg -3'
miRNA:   3'- -CUCGgUGCGACAUgug--CugCGCGCUU- -5'
8211 5' -57.1 NC_001978.2 + 33266 0.69 0.33236
Target:  5'- uGAGCUguACGgaGUGCAa-GCGCGCGAc -3'
miRNA:   3'- -CUCGG--UGCgaCAUGUgcUGCGCGCUu -5'
8211 5' -57.1 NC_001978.2 + 16166 0.7 0.271259
Target:  5'- -uGCCACGCUGgGCAcCGACGgGCu-- -3'
miRNA:   3'- cuCGGUGCGACaUGU-GCUGCgCGcuu -5'
8211 5' -57.1 NC_001978.2 + 24384 0.73 0.19696
Target:  5'- cGGGCCcgACGCUGcGCcugcccuggGCGACGUGCGAGc -3'
miRNA:   3'- -CUCGG--UGCGACaUG---------UGCUGCGCGCUU- -5'
8211 5' -57.1 NC_001978.2 + 34277 1.05 0.000748
Target:  5'- gGAGCCACGCUGUACACGACGCGCGAAc -3'
miRNA:   3'- -CUCGGUGCGACAUGUGCUGCGCGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.