miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8212 3' -54.4 NC_001978.2 + 34391 1.12 0.000544
Target:  5'- gGGGUGCCUACUCACGUGAGUAGGCAGg -3'
miRNA:   3'- -CCCACGGAUGAGUGCACUCAUCCGUC- -5'
8212 3' -54.4 NC_001978.2 + 1219 0.95 0.008365
Target:  5'- --aUGCCUACUCACGUGAGUAGGCAGc -3'
miRNA:   3'- cccACGGAUGAGUGCACUCAUCCGUC- -5'
8212 3' -54.4 NC_001978.2 + 1283 0.92 0.015419
Target:  5'- --cUGCCUACUCACGUGAGUAGGCAu -3'
miRNA:   3'- cccACGGAUGAGUGCACUCAUCCGUc -5'
8212 3' -54.4 NC_001978.2 + 34458 0.91 0.015897
Target:  5'- --cUGCCUACUCACGUGAGUAGGCAc -3'
miRNA:   3'- cccACGGAUGAGUGCACUCAUCCGUc -5'
8212 3' -54.4 NC_001978.2 + 40988 0.91 0.015897
Target:  5'- ---aGCCUACUCACGUGAGUAGGUAGg -3'
miRNA:   3'- cccaCGGAUGAGUGCACUCAUCCGUC- -5'
8212 3' -54.4 NC_001978.2 + 29774 0.9 0.019088
Target:  5'- aGGUGaCUACUCACGUGAGUAGGCAu -3'
miRNA:   3'- cCCACgGAUGAGUGCACUCAUCCGUc -5'
8212 3' -54.4 NC_001978.2 + 34734 0.85 0.044574
Target:  5'- uGGGaagccccuaCCUACUCACGUGAGUAGGUAGg -3'
miRNA:   3'- -CCCac-------GGAUGAGUGCACUCAUCCGUC- -5'
8212 3' -54.4 NC_001978.2 + 2912 0.85 0.048776
Target:  5'- cGGGUcuuaCCUACUCACGUGAGUAGGUu- -3'
miRNA:   3'- -CCCAc---GGAUGAGUGCACUCAUCCGuc -5'
8212 3' -54.4 NC_001978.2 + 29596 0.84 0.050866
Target:  5'- gGGGUGucagaugaucuucaaCCUACUCACGUGAGUAGGUu- -3'
miRNA:   3'- -CCCAC---------------GGAUGAGUGCACUCAUCCGuc -5'
8212 3' -54.4 NC_001978.2 + 19751 0.84 0.053363
Target:  5'- ---aGCCUACUCACGUGAGUAGuGUAGa -3'
miRNA:   3'- cccaCGGAUGAGUGCACUCAUC-CGUC- -5'
8212 3' -54.4 NC_001978.2 + 34845 0.84 0.054983
Target:  5'- ---aGCCUACUCACGUGAGUAGGUu- -3'
miRNA:   3'- cccaCGGAUGAGUGCACUCAUCCGuc -5'
8212 3' -54.4 NC_001978.2 + 11137 0.83 0.060134
Target:  5'- ----aCCUACUCACGUGAGUAGGUAGg -3'
miRNA:   3'- cccacGGAUGAGUGCACUCAUCCGUC- -5'
8212 3' -54.4 NC_001978.2 + 34805 0.83 0.060134
Target:  5'- ----aCCUACUCACGUGAGUAGGUAGg -3'
miRNA:   3'- cccacGGAUGAGUGCACUCAUCCGUC- -5'
8212 3' -54.4 NC_001978.2 + 16991 0.82 0.078541
Target:  5'- ----aCCUACUCACGUGAGUAGGUAGc -3'
miRNA:   3'- cccacGGAUGAGUGCACUCAUCCGUC- -5'
8212 3' -54.4 NC_001978.2 + 17059 0.81 0.085798
Target:  5'- aGGGcgcuaCCUACUCACGUGAGUAGGUugAGa -3'
miRNA:   3'- -CCCac---GGAUGAGUGCACUCAUCCG--UC- -5'
8212 3' -54.4 NC_001978.2 + 34777 0.8 0.102268
Target:  5'- -cGUGuucaaCCUACUCACGUGAGUAGGCu- -3'
miRNA:   3'- ccCAC-----GGAUGAGUGCACUCAUCCGuc -5'
8212 3' -54.4 NC_001978.2 + 41049 0.8 0.105288
Target:  5'- ----aCCUACUCACGUGAGUAGGCuGg -3'
miRNA:   3'- cccacGGAUGAGUGCACUCAUCCGuC- -5'
8212 3' -54.4 NC_001978.2 + 11069 0.79 0.118225
Target:  5'- cGGUuccuaCCUACUCACGUGAGUAGGUu- -3'
miRNA:   3'- cCCAc----GGAUGAGUGCACUCAUCCGuc -5'
8212 3' -54.4 NC_001978.2 + 6080 0.79 0.121683
Target:  5'- cGGGcGCUcagcgUACUCACGUGAGUAGGUu- -3'
miRNA:   3'- -CCCaCGG-----AUGAGUGCACUCAUCCGuc -5'
8212 3' -54.4 NC_001978.2 + 2845 0.79 0.125236
Target:  5'- ----aCCUACUCACGUGAGUAGGUAa -3'
miRNA:   3'- cccacGGAUGAGUGCACUCAUCCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.