miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8213 3' -57.5 NC_001978.2 + 26863 0.66 0.472959
Target:  5'- gGCaAGGUCguUGGGAAuGCCCCcGCCg- -3'
miRNA:   3'- gCGaUUCGG--ACCCUU-CGGGGaUGGau -5'
8213 3' -57.5 NC_001978.2 + 39515 0.68 0.36694
Target:  5'- gGCUu-GCCcccGGGaAAGCCCUUGCCg- -3'
miRNA:   3'- gCGAuuCGGa--CCC-UUCGGGGAUGGau -5'
8213 3' -57.5 NC_001978.2 + 25498 0.68 0.366053
Target:  5'- gCGCcucAGCCUGGGcgacgucGAGCCCgaACCg- -3'
miRNA:   3'- -GCGau-UCGGACCC-------UUCGGGgaUGGau -5'
8213 3' -57.5 NC_001978.2 + 41246 0.68 0.358143
Target:  5'- uGCUAccuGCCUGGGuuGGUaCCUGCCa- -3'
miRNA:   3'- gCGAUu--CGGACCCu-UCGgGGAUGGau -5'
8213 3' -57.5 NC_001978.2 + 9043 0.68 0.349496
Target:  5'- cCGC--AGCaaGGGcAAGCCCCUucGCCUGu -3'
miRNA:   3'- -GCGauUCGgaCCC-UUCGGGGA--UGGAU- -5'
8213 3' -57.5 NC_001978.2 + 2976 0.68 0.332651
Target:  5'- cCGUcGAGCgCUGGGGAguGCCCCcGCCc- -3'
miRNA:   3'- -GCGaUUCG-GACCCUU--CGGGGaUGGau -5'
8213 3' -57.5 NC_001978.2 + 24898 0.69 0.324455
Target:  5'- cCGCUGAGCaaGGGggGCgCCgACgCUGc -3'
miRNA:   3'- -GCGAUUCGgaCCCuuCGgGGaUG-GAU- -5'
8213 3' -57.5 NC_001978.2 + 32662 0.69 0.31641
Target:  5'- aCGCUGAcGCCcuggGGGAAGCCgCCggGCgUAu -3'
miRNA:   3'- -GCGAUU-CGGa---CCCUUCGG-GGa-UGgAU- -5'
8213 3' -57.5 NC_001978.2 + 36652 0.71 0.213537
Target:  5'- aCGCUGAGC--GGGAAGCCCUgagcGCCc- -3'
miRNA:   3'- -GCGAUUCGgaCCCUUCGGGGa---UGGau -5'
8213 3' -57.5 NC_001978.2 + 108 0.72 0.200573
Target:  5'- uCGUU-GGCCUGGGggGCgCCUggguccggcggcucACCUAg -3'
miRNA:   3'- -GCGAuUCGGACCCuuCGgGGA--------------UGGAU- -5'
8213 3' -57.5 NC_001978.2 + 34724 1.06 0.000507
Target:  5'- gCGCUAAGCCUGGGAAGCCCCUACCUAc -3'
miRNA:   3'- -GCGAUUCGGACCCUUCGGGGAUGGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.