Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8214 | 3' | -52.8 | NC_001978.2 | + | 8212 | 0.66 | 0.757911 |
Target: 5'- cGCCGUcaUCAAGGCAggcucaGCGGCucgcGUg -3' miRNA: 3'- -CGGCAcaAGUUCCGUg-----UGCCGuu--CAa -5' |
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8214 | 3' | -52.8 | NC_001978.2 | + | 30404 | 0.66 | 0.757911 |
Target: 5'- uGCCGUGUcgcucgaCAAGGuCACGuCGGCuGAGa- -3' miRNA: 3'- -CGGCACAa------GUUCC-GUGU-GCCG-UUCaa -5' |
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8214 | 3' | -52.8 | NC_001978.2 | + | 19553 | 0.66 | 0.736025 |
Target: 5'- gGCCGUG---AAGGguCACGGCAc--- -3' miRNA: 3'- -CGGCACaagUUCCguGUGCCGUucaa -5' |
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8214 | 3' | -52.8 | NC_001978.2 | + | 22582 | 0.66 | 0.734917 |
Target: 5'- aGCCG-GUcgcacggaaggcgUCGGGGCGCAUGGUGAc-- -3' miRNA: 3'- -CGGCaCA-------------AGUUCCGUGUGCCGUUcaa -5' |
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8214 | 3' | -52.8 | NC_001978.2 | + | 31603 | 0.66 | 0.713676 |
Target: 5'- cGCCGUuaaGcgCGuguGGgGCAUGGCGAGUg -3' miRNA: 3'- -CGGCA---CaaGUu--CCgUGUGCCGUUCAa -5' |
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8214 | 3' | -52.8 | NC_001978.2 | + | 5888 | 0.67 | 0.67837 |
Target: 5'- uGCCGUugaagguGUcCGGGGCGCcgACGGUAAGa- -3' miRNA: 3'- -CGGCA-------CAaGUUCCGUG--UGCCGUUCaa -5' |
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8214 | 3' | -52.8 | NC_001978.2 | + | 28959 | 0.68 | 0.587121 |
Target: 5'- --gGUGUUCAAgGGCGCcggauuCGGCAAGg- -3' miRNA: 3'- cggCACAAGUU-CCGUGu-----GCCGUUCaa -5' |
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8214 | 3' | -52.8 | NC_001978.2 | + | 701 | 0.69 | 0.575646 |
Target: 5'- cGCCGcGUUCAGcaaGCGCuaaGCGGCAGGg- -3' miRNA: 3'- -CGGCaCAAGUUc--CGUG---UGCCGUUCaa -5' |
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8214 | 3' | -52.8 | NC_001978.2 | + | 28576 | 0.69 | 0.541567 |
Target: 5'- aGCCGUccUUCGAGcgaaGCGCGCGGgCAAGUg -3' miRNA: 3'- -CGGCAc-AAGUUC----CGUGUGCC-GUUCAa -5' |
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8214 | 3' | -52.8 | NC_001978.2 | + | 39423 | 0.71 | 0.454639 |
Target: 5'- aGgCGUGguuggacggCAGGGgGCGCGGCAAGg- -3' miRNA: 3'- -CgGCACaa-------GUUCCgUGUGCCGUUCaa -5' |
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8214 | 3' | -52.8 | NC_001978.2 | + | 35127 | 1.08 | 0.001153 |
Target: 5'- aGCCGUGUUCAAGGCACACGGCAAGUUg -3' miRNA: 3'- -CGGCACAAGUUCCGUGUGCCGUUCAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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