miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8214 3' -52.8 NC_001978.2 + 30404 0.66 0.757911
Target:  5'- uGCCGUGUcgcucgaCAAGGuCACGuCGGCuGAGa- -3'
miRNA:   3'- -CGGCACAa------GUUCC-GUGU-GCCG-UUCaa -5'
8214 3' -52.8 NC_001978.2 + 8212 0.66 0.757911
Target:  5'- cGCCGUcaUCAAGGCAggcucaGCGGCucgcGUg -3'
miRNA:   3'- -CGGCAcaAGUUCCGUg-----UGCCGuu--CAa -5'
8214 3' -52.8 NC_001978.2 + 19553 0.66 0.736025
Target:  5'- gGCCGUG---AAGGguCACGGCAc--- -3'
miRNA:   3'- -CGGCACaagUUCCguGUGCCGUucaa -5'
8214 3' -52.8 NC_001978.2 + 22582 0.66 0.734917
Target:  5'- aGCCG-GUcgcacggaaggcgUCGGGGCGCAUGGUGAc-- -3'
miRNA:   3'- -CGGCaCA-------------AGUUCCGUGUGCCGUUcaa -5'
8214 3' -52.8 NC_001978.2 + 31603 0.66 0.713676
Target:  5'- cGCCGUuaaGcgCGuguGGgGCAUGGCGAGUg -3'
miRNA:   3'- -CGGCA---CaaGUu--CCgUGUGCCGUUCAa -5'
8214 3' -52.8 NC_001978.2 + 5888 0.67 0.67837
Target:  5'- uGCCGUugaagguGUcCGGGGCGCcgACGGUAAGa- -3'
miRNA:   3'- -CGGCA-------CAaGUUCCGUG--UGCCGUUCaa -5'
8214 3' -52.8 NC_001978.2 + 28959 0.68 0.587121
Target:  5'- --gGUGUUCAAgGGCGCcggauuCGGCAAGg- -3'
miRNA:   3'- cggCACAAGUU-CCGUGu-----GCCGUUCaa -5'
8214 3' -52.8 NC_001978.2 + 701 0.69 0.575646
Target:  5'- cGCCGcGUUCAGcaaGCGCuaaGCGGCAGGg- -3'
miRNA:   3'- -CGGCaCAAGUUc--CGUG---UGCCGUUCaa -5'
8214 3' -52.8 NC_001978.2 + 28576 0.69 0.541567
Target:  5'- aGCCGUccUUCGAGcgaaGCGCGCGGgCAAGUg -3'
miRNA:   3'- -CGGCAc-AAGUUC----CGUGUGCC-GUUCAa -5'
8214 3' -52.8 NC_001978.2 + 39423 0.71 0.454639
Target:  5'- aGgCGUGguuggacggCAGGGgGCGCGGCAAGg- -3'
miRNA:   3'- -CgGCACaa-------GUUCCgUGUGCCGUUCaa -5'
8214 3' -52.8 NC_001978.2 + 35127 1.08 0.001153
Target:  5'- aGCCGUGUUCAAGGCACACGGCAAGUUg -3'
miRNA:   3'- -CGGCACAAGUUCCGUGUGCCGUUCAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.