Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8214 | 5' | -58.8 | NC_001978.2 | + | 32520 | 0.66 | 0.458545 |
Target: 5'- gUGAGUaCGCUG--AGCGCCCCGu--- -3' miRNA: 3'- -ACUCAaGCGGCagUCGCGGGGCcaug -5' |
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8214 | 5' | -58.8 | NC_001978.2 | + | 29843 | 0.66 | 0.448679 |
Target: 5'- ----gUCGCacgGUCAGUGaCCCCGGUcACu -3' miRNA: 3'- acucaAGCGg--CAGUCGC-GGGGCCA-UG- -5' |
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8214 | 5' | -58.8 | NC_001978.2 | + | 19946 | 0.66 | 0.429303 |
Target: 5'- gGAGcgCGUgaaucgCGUCGGC-CCCCGGcACg -3' miRNA: 3'- aCUCaaGCG------GCAGUCGcGGGGCCaUG- -5' |
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8214 | 5' | -58.8 | NC_001978.2 | + | 13243 | 0.67 | 0.41043 |
Target: 5'- cGGGUUCGCCGUCgcggAGCaCCacaaggCCGGaACg -3' miRNA: 3'- aCUCAAGCGGCAG----UCGcGG------GGCCaUG- -5' |
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8214 | 5' | -58.8 | NC_001978.2 | + | 16250 | 0.67 | 0.41043 |
Target: 5'- gGAGUUgGUCaGUCGGaacaaGCCCguCGGUGCc -3' miRNA: 3'- aCUCAAgCGG-CAGUCg----CGGG--GCCAUG- -5' |
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8214 | 5' | -58.8 | NC_001978.2 | + | 1833 | 0.67 | 0.401188 |
Target: 5'- aGGGUUCaagcccuguuGCCGUcCGGCGUccgccgacacgaCCCGGUAa -3' miRNA: 3'- aCUCAAG----------CGGCA-GUCGCG------------GGGCCAUg -5' |
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8214 | 5' | -58.8 | NC_001978.2 | + | 38099 | 0.67 | 0.374274 |
Target: 5'- -cGGcUCGCCGUCGuCGUCCUGGgGCa -3' miRNA: 3'- acUCaAGCGGCAGUcGCGGGGCCaUG- -5' |
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8214 | 5' | -58.8 | NC_001978.2 | + | 1402 | 0.67 | 0.365578 |
Target: 5'- --cGUUCGCCgGUCAGcCGUUCCGGc-- -3' miRNA: 3'- acuCAAGCGG-CAGUC-GCGGGGCCaug -5' |
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8214 | 5' | -58.8 | NC_001978.2 | + | 28772 | 0.68 | 0.33221 |
Target: 5'- uUGAGccgcgaagUCGCCGUUgauggacauGCGCCCC-GUGCg -3' miRNA: 3'- -ACUCa-------AGCGGCAGu--------CGCGGGGcCAUG- -5' |
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8214 | 5' | -58.8 | NC_001978.2 | + | 38315 | 0.68 | 0.316384 |
Target: 5'- cUGAGggUUGCCGcCGGgGCUUCGGUGu -3' miRNA: 3'- -ACUCa-AGCGGCaGUCgCGGGGCCAUg -5' |
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8214 | 5' | -58.8 | NC_001978.2 | + | 24971 | 0.68 | 0.316384 |
Target: 5'- --uGUgCGCagCGUCGGCGCCCCccuugcucagcgGGUGCa -3' miRNA: 3'- acuCAaGCG--GCAGUCGCGGGG------------CCAUG- -5' |
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8214 | 5' | -58.8 | NC_001978.2 | + | 197 | 0.68 | 0.31406 |
Target: 5'- cUGAGUcCGCugccccCGUCguguacgagggucgAGCGCCCCGuGUGCc -3' miRNA: 3'- -ACUCAaGCG------GCAG--------------UCGCGGGGC-CAUG- -5' |
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8214 | 5' | -58.8 | NC_001978.2 | + | 6096 | 0.69 | 0.272349 |
Target: 5'- gGAGUga-CCGUCAgaaccuucGCGCCCCGG-GCg -3' miRNA: 3'- aCUCAagcGGCAGU--------CGCGGGGCCaUG- -5' |
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8214 | 5' | -58.8 | NC_001978.2 | + | 29300 | 0.7 | 0.233373 |
Target: 5'- aUGAGaUCGUguUCAGCGCCCCGaagGCg -3' miRNA: 3'- -ACUCaAGCGgcAGUCGCGGGGCca-UG- -5' |
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8214 | 5' | -58.8 | NC_001978.2 | + | 4156 | 0.71 | 0.221463 |
Target: 5'- cGAcUUCGCCcagguUCAGCgGCaCCCGGUACu -3' miRNA: 3'- aCUcAAGCGGc----AGUCG-CG-GGGCCAUG- -5' |
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8214 | 5' | -58.8 | NC_001978.2 | + | 35144 | 0.71 | 0.204573 |
Target: 5'- -cAGUUCGUCgGUCAGUGCCCCGcccaggACg -3' miRNA: 3'- acUCAAGCGG-CAGUCGCGGGGCca----UG- -5' |
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8214 | 5' | -58.8 | NC_001978.2 | + | 26178 | 0.71 | 0.199195 |
Target: 5'- gGAuGcgCGCagCGUCGGCGCCCUGaGUGCu -3' miRNA: 3'- aCU-CaaGCG--GCAGUCGCGGGGC-CAUG- -5' |
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8214 | 5' | -58.8 | NC_001978.2 | + | 5806 | 0.72 | 0.174125 |
Target: 5'- -cAGUcCGCucuuacCGUCGGCGCCCCGG-ACa -3' miRNA: 3'- acUCAaGCG------GCAGUCGCGGGGCCaUG- -5' |
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8214 | 5' | -58.8 | NC_001978.2 | + | 9000 | 0.74 | 0.131924 |
Target: 5'- cGGGUggcgcuaUCGCCGUCGGCauugGCgCCGGUAUc -3' miRNA: 3'- aCUCA-------AGCGGCAGUCG----CGgGGCCAUG- -5' |
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8214 | 5' | -58.8 | NC_001978.2 | + | 35167 | 1.1 | 0.000275 |
Target: 5'- cUGAGUUCGCCGUCAGCGCCCCGGUACg -3' miRNA: 3'- -ACUCAAGCGGCAGUCGCGGGGCCAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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