miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8214 5' -58.8 NC_001978.2 + 32520 0.66 0.458545
Target:  5'- gUGAGUaCGCUG--AGCGCCCCGu--- -3'
miRNA:   3'- -ACUCAaGCGGCagUCGCGGGGCcaug -5'
8214 5' -58.8 NC_001978.2 + 29843 0.66 0.448679
Target:  5'- ----gUCGCacgGUCAGUGaCCCCGGUcACu -3'
miRNA:   3'- acucaAGCGg--CAGUCGC-GGGGCCA-UG- -5'
8214 5' -58.8 NC_001978.2 + 19946 0.66 0.429303
Target:  5'- gGAGcgCGUgaaucgCGUCGGC-CCCCGGcACg -3'
miRNA:   3'- aCUCaaGCG------GCAGUCGcGGGGCCaUG- -5'
8214 5' -58.8 NC_001978.2 + 13243 0.67 0.41043
Target:  5'- cGGGUUCGCCGUCgcggAGCaCCacaaggCCGGaACg -3'
miRNA:   3'- aCUCAAGCGGCAG----UCGcGG------GGCCaUG- -5'
8214 5' -58.8 NC_001978.2 + 16250 0.67 0.41043
Target:  5'- gGAGUUgGUCaGUCGGaacaaGCCCguCGGUGCc -3'
miRNA:   3'- aCUCAAgCGG-CAGUCg----CGGG--GCCAUG- -5'
8214 5' -58.8 NC_001978.2 + 1833 0.67 0.401188
Target:  5'- aGGGUUCaagcccuguuGCCGUcCGGCGUccgccgacacgaCCCGGUAa -3'
miRNA:   3'- aCUCAAG----------CGGCA-GUCGCG------------GGGCCAUg -5'
8214 5' -58.8 NC_001978.2 + 38099 0.67 0.374274
Target:  5'- -cGGcUCGCCGUCGuCGUCCUGGgGCa -3'
miRNA:   3'- acUCaAGCGGCAGUcGCGGGGCCaUG- -5'
8214 5' -58.8 NC_001978.2 + 1402 0.67 0.365578
Target:  5'- --cGUUCGCCgGUCAGcCGUUCCGGc-- -3'
miRNA:   3'- acuCAAGCGG-CAGUC-GCGGGGCCaug -5'
8214 5' -58.8 NC_001978.2 + 28772 0.68 0.33221
Target:  5'- uUGAGccgcgaagUCGCCGUUgauggacauGCGCCCC-GUGCg -3'
miRNA:   3'- -ACUCa-------AGCGGCAGu--------CGCGGGGcCAUG- -5'
8214 5' -58.8 NC_001978.2 + 38315 0.68 0.316384
Target:  5'- cUGAGggUUGCCGcCGGgGCUUCGGUGu -3'
miRNA:   3'- -ACUCa-AGCGGCaGUCgCGGGGCCAUg -5'
8214 5' -58.8 NC_001978.2 + 24971 0.68 0.316384
Target:  5'- --uGUgCGCagCGUCGGCGCCCCccuugcucagcgGGUGCa -3'
miRNA:   3'- acuCAaGCG--GCAGUCGCGGGG------------CCAUG- -5'
8214 5' -58.8 NC_001978.2 + 197 0.68 0.31406
Target:  5'- cUGAGUcCGCugccccCGUCguguacgagggucgAGCGCCCCGuGUGCc -3'
miRNA:   3'- -ACUCAaGCG------GCAG--------------UCGCGGGGC-CAUG- -5'
8214 5' -58.8 NC_001978.2 + 6096 0.69 0.272349
Target:  5'- gGAGUga-CCGUCAgaaccuucGCGCCCCGG-GCg -3'
miRNA:   3'- aCUCAagcGGCAGU--------CGCGGGGCCaUG- -5'
8214 5' -58.8 NC_001978.2 + 29300 0.7 0.233373
Target:  5'- aUGAGaUCGUguUCAGCGCCCCGaagGCg -3'
miRNA:   3'- -ACUCaAGCGgcAGUCGCGGGGCca-UG- -5'
8214 5' -58.8 NC_001978.2 + 4156 0.71 0.221463
Target:  5'- cGAcUUCGCCcagguUCAGCgGCaCCCGGUACu -3'
miRNA:   3'- aCUcAAGCGGc----AGUCG-CG-GGGCCAUG- -5'
8214 5' -58.8 NC_001978.2 + 35144 0.71 0.204573
Target:  5'- -cAGUUCGUCgGUCAGUGCCCCGcccaggACg -3'
miRNA:   3'- acUCAAGCGG-CAGUCGCGGGGCca----UG- -5'
8214 5' -58.8 NC_001978.2 + 26178 0.71 0.199195
Target:  5'- gGAuGcgCGCagCGUCGGCGCCCUGaGUGCu -3'
miRNA:   3'- aCU-CaaGCG--GCAGUCGCGGGGC-CAUG- -5'
8214 5' -58.8 NC_001978.2 + 5806 0.72 0.174125
Target:  5'- -cAGUcCGCucuuacCGUCGGCGCCCCGG-ACa -3'
miRNA:   3'- acUCAaGCG------GCAGUCGCGGGGCCaUG- -5'
8214 5' -58.8 NC_001978.2 + 9000 0.74 0.131924
Target:  5'- cGGGUggcgcuaUCGCCGUCGGCauugGCgCCGGUAUc -3'
miRNA:   3'- aCUCA-------AGCGGCAGUCG----CGgGGCCAUG- -5'
8214 5' -58.8 NC_001978.2 + 35167 1.1 0.000275
Target:  5'- cUGAGUUCGCCGUCAGCGCCCCGGUACg -3'
miRNA:   3'- -ACUCAAGCGGCAGUCGCGGGGCCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.