Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8216 | 3' | -54.5 | NC_001978.2 | + | 20375 | 0.68 | 0.514373 |
Target: 5'- gGAAGCcgaAGCGGCGaaGGCCgaaGUCGAg- -3' miRNA: 3'- gCUUCG---UUGCCGCggCUGG---UAGCUau -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 4385 | 0.68 | 0.547147 |
Target: 5'- uGggGCAGgGGCGCCGucGCUG-CGAc- -3' miRNA: 3'- gCuuCGUUgCCGCGGC--UGGUaGCUau -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 4450 | 0.67 | 0.580553 |
Target: 5'- uCGcAGCGACGGCGCCccugccCCAggaaCGAUGc -3' miRNA: 3'- -GCuUCGUUGCCGCGGcu----GGUa---GCUAU- -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 33629 | 0.68 | 0.56936 |
Target: 5'- cCGAcGGUcACGGCGCCGACaagggCGAc- -3' miRNA: 3'- -GCU-UCGuUGCCGCGGCUGgua--GCUau -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 13872 | 0.68 | 0.558222 |
Target: 5'- --cGGguGCGGCuCCGGCCGUCGcUAu -3' miRNA: 3'- gcuUCguUGCCGcGGCUGGUAGCuAU- -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 16767 | 0.69 | 0.503623 |
Target: 5'- gGGcAGCGgaACGGCGCCGACaugCGUUGAc- -3' miRNA: 3'- gCU-UCGU--UGCCGCGGCUG---GUAGCUau -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 37544 | 0.69 | 0.492973 |
Target: 5'- ---cGCAACGG-GCCGACCAcgUUGAa- -3' miRNA: 3'- gcuuCGUUGCCgCGGCUGGU--AGCUau -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 16329 | 0.69 | 0.461671 |
Target: 5'- aCGucGGCAGCGGUaaGCgUGACCGUCGGa- -3' miRNA: 3'- -GCu-UCGUUGCCG--CG-GCUGGUAGCUau -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 35737 | 0.71 | 0.356878 |
Target: 5'- aCGggGCuuCGaGUGCCGACCGgucuUCGGg- -3' miRNA: 3'- -GCuuCGuuGC-CGCGGCUGGU----AGCUau -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 25808 | 0.67 | 0.591791 |
Target: 5'- cCGGacGGCAACGGCgucauaGCCGACCGauaCGGc- -3' miRNA: 3'- -GCU--UCGUUGCCG------CGGCUGGUa--GCUau -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 13199 | 0.67 | 0.603064 |
Target: 5'- uGAAGCGuguCGGgGUCGGCagCGUCGAg- -3' miRNA: 3'- gCUUCGUu--GCCgCGGCUG--GUAGCUau -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 11525 | 0.67 | 0.614364 |
Target: 5'- -cAGGUcgAGCGGCGCCGACCGcUUGcGUGc -3' miRNA: 3'- gcUUCG--UUGCCGCGGCUGGU-AGC-UAU- -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 36968 | 0.67 | 0.614364 |
Target: 5'- aCGGuGGCAG-GGUGCCGACCGgcagCGGc- -3' miRNA: 3'- -GCU-UCGUUgCCGCGGCUGGUa---GCUau -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 8599 | 0.67 | 0.624549 |
Target: 5'- gCGAAGCAucggggcACGGCGCgaacCGGCCuuguucagggAUCGAg- -3' miRNA: 3'- -GCUUCGU-------UGCCGCG----GCUGG----------UAGCUau -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 34707 | 0.66 | 0.637003 |
Target: 5'- aCGggGCucaguCGGCGUCGGC--UCGAa- -3' miRNA: 3'- -GCuuCGuu---GCCGCGGCUGguAGCUau -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 5210 | 0.66 | 0.648321 |
Target: 5'- aCGAAG-AACGGCGUCG-UCGUCGu-- -3' miRNA: 3'- -GCUUCgUUGCCGCGGCuGGUAGCuau -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 7261 | 0.66 | 0.659623 |
Target: 5'- aGAAGCGAacCGGCuCCGG-CGUCGAg- -3' miRNA: 3'- gCUUCGUU--GCCGcGGCUgGUAGCUau -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 11886 | 0.66 | 0.670898 |
Target: 5'- uCGGAGCcuuCGGCGUucgUGACCGUCu--- -3' miRNA: 3'- -GCUUCGuu-GCCGCG---GCUGGUAGcuau -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 20849 | 0.66 | 0.675398 |
Target: 5'- uCGGAcGCGACGGCaagggacucuuugcgGuCCgGACCGUCGAa- -3' miRNA: 3'- -GCUU-CGUUGCCG---------------C-GG-CUGGUAGCUau -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 29214 | 0.76 | 0.179871 |
Target: 5'- -cGAGCGGCaGGCGCCGACCcgUGAc- -3' miRNA: 3'- gcUUCGUUG-CCGCGGCUGGuaGCUau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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