miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8216 5' -60.7 NC_001978.2 + 26312 0.66 0.393451
Target:  5'- cGGCGCuugugcucgccgguUGcCUGCCGGAGUcGCGCggcuucaCCa -3'
miRNA:   3'- -CCGUG--------------ACuGGCGGCCUCA-CGCGa------GGc -5'
8216 5' -60.7 NC_001978.2 + 22678 0.66 0.387266
Target:  5'- gGGCgcgucGCUGAgUGCCGGucaccaUGCGCcCCGa -3'
miRNA:   3'- -CCG-----UGACUgGCGGCCuc----ACGCGaGGC- -5'
8216 5' -60.7 NC_001978.2 + 1847 0.67 0.33694
Target:  5'- cGCGCUGA-CGCUGGgcAGUGcCGC-CCGu -3'
miRNA:   3'- cCGUGACUgGCGGCC--UCAC-GCGaGGC- -5'
8216 5' -60.7 NC_001978.2 + 19419 0.67 0.33694
Target:  5'- cGGCGu---CCGUCGGGacGUaGCGCUCCGa -3'
miRNA:   3'- -CCGUgacuGGCGGCCU--CA-CGCGAGGC- -5'
8216 5' -60.7 NC_001978.2 + 17383 0.67 0.332177
Target:  5'- aGCGCcGACCGCCGGAuacGCcgaccaacgccccuuGUUCCGg -3'
miRNA:   3'- cCGUGaCUGGCGGCCUca-CG---------------CGAGGC- -5'
8216 5' -60.7 NC_001978.2 + 7135 0.68 0.287283
Target:  5'- cGCGCUGACCGCCGGAacauggucaacauggGUG-GCg--- -3'
miRNA:   3'- cCGUGACUGGCGGCCU---------------CACgCGaggc -5'
8216 5' -60.7 NC_001978.2 + 26195 0.68 0.27752
Target:  5'- uGGCauggACUGACgGCCGGAucaaGUaCGCgUCCGg -3'
miRNA:   3'- -CCG----UGACUGgCGGCCU----CAcGCG-AGGC- -5'
8216 5' -60.7 NC_001978.2 + 25647 0.68 0.27752
Target:  5'- aGCGCUGGgCGCCGuauGGcGUGUUCCGg -3'
miRNA:   3'- cCGUGACUgGCGGCc--UCaCGCGAGGC- -5'
8216 5' -60.7 NC_001978.2 + 25744 0.69 0.257493
Target:  5'- cGGCuaugACgccguuGCCGuCCGGGGUGCGuCUCUGg -3'
miRNA:   3'- -CCG----UGac----UGGC-GGCCUCACGC-GAGGC- -5'
8216 5' -60.7 NC_001978.2 + 18569 0.69 0.232649
Target:  5'- gGGCAaggauuCCGUCGGGGcGCGuCUCCGg -3'
miRNA:   3'- -CCGUgacu--GGCGGCCUCaCGC-GAGGC- -5'
8216 5' -60.7 NC_001978.2 + 9158 0.71 0.184091
Target:  5'- aGGCGCUuaGCCucaGCCGGAGUcGCGC-CCa -3'
miRNA:   3'- -CCGUGAc-UGG---CGGCCUCA-CGCGaGGc -5'
8216 5' -60.7 NC_001978.2 + 18661 0.72 0.148671
Target:  5'- cGCGCUGauauccguaacGCUGCCGGAGacGCGCcCCGa -3'
miRNA:   3'- cCGUGAC-----------UGGCGGCCUCa-CGCGaGGC- -5'
8216 5' -60.7 NC_001978.2 + 33572 0.72 0.144707
Target:  5'- cGGCGCcgUGACCGUCGG-GUGUGaCcCCGg -3'
miRNA:   3'- -CCGUG--ACUGGCGGCCuCACGC-GaGGC- -5'
8216 5' -60.7 NC_001978.2 + 19864 0.72 0.13744
Target:  5'- cGCAUUGGCgccgUGCCGGGGgccgacgcgauucacGCGCUCCGg -3'
miRNA:   3'- cCGUGACUG----GCGGCCUCa--------------CGCGAGGC- -5'
8216 5' -60.7 NC_001978.2 + 34169 0.75 0.083105
Target:  5'- gGGCaACUGAgCGCCGucGAGUGCGCgcccaacUCCGa -3'
miRNA:   3'- -CCG-UGACUgGCGGC--CUCACGCG-------AGGC- -5'
8216 5' -60.7 NC_001978.2 + 37414 1.09 0.000209
Target:  5'- aGGCACUGACCGCCGGAGUGCGCUCCGc -3'
miRNA:   3'- -CCGUGACUGGCGGCCUCACGCGAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.