Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8216 | 5' | -60.7 | NC_001978.2 | + | 26312 | 0.66 | 0.393451 |
Target: 5'- cGGCGCuugugcucgccgguUGcCUGCCGGAGUcGCGCggcuucaCCa -3' miRNA: 3'- -CCGUG--------------ACuGGCGGCCUCA-CGCGa------GGc -5' |
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8216 | 5' | -60.7 | NC_001978.2 | + | 22678 | 0.66 | 0.387266 |
Target: 5'- gGGCgcgucGCUGAgUGCCGGucaccaUGCGCcCCGa -3' miRNA: 3'- -CCG-----UGACUgGCGGCCuc----ACGCGaGGC- -5' |
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8216 | 5' | -60.7 | NC_001978.2 | + | 1847 | 0.67 | 0.33694 |
Target: 5'- cGCGCUGA-CGCUGGgcAGUGcCGC-CCGu -3' miRNA: 3'- cCGUGACUgGCGGCC--UCAC-GCGaGGC- -5' |
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8216 | 5' | -60.7 | NC_001978.2 | + | 19419 | 0.67 | 0.33694 |
Target: 5'- cGGCGu---CCGUCGGGacGUaGCGCUCCGa -3' miRNA: 3'- -CCGUgacuGGCGGCCU--CA-CGCGAGGC- -5' |
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8216 | 5' | -60.7 | NC_001978.2 | + | 17383 | 0.67 | 0.332177 |
Target: 5'- aGCGCcGACCGCCGGAuacGCcgaccaacgccccuuGUUCCGg -3' miRNA: 3'- cCGUGaCUGGCGGCCUca-CG---------------CGAGGC- -5' |
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8216 | 5' | -60.7 | NC_001978.2 | + | 7135 | 0.68 | 0.287283 |
Target: 5'- cGCGCUGACCGCCGGAacauggucaacauggGUG-GCg--- -3' miRNA: 3'- cCGUGACUGGCGGCCU---------------CACgCGaggc -5' |
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8216 | 5' | -60.7 | NC_001978.2 | + | 26195 | 0.68 | 0.27752 |
Target: 5'- uGGCauggACUGACgGCCGGAucaaGUaCGCgUCCGg -3' miRNA: 3'- -CCG----UGACUGgCGGCCU----CAcGCG-AGGC- -5' |
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8216 | 5' | -60.7 | NC_001978.2 | + | 25647 | 0.68 | 0.27752 |
Target: 5'- aGCGCUGGgCGCCGuauGGcGUGUUCCGg -3' miRNA: 3'- cCGUGACUgGCGGCc--UCaCGCGAGGC- -5' |
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8216 | 5' | -60.7 | NC_001978.2 | + | 25744 | 0.69 | 0.257493 |
Target: 5'- cGGCuaugACgccguuGCCGuCCGGGGUGCGuCUCUGg -3' miRNA: 3'- -CCG----UGac----UGGC-GGCCUCACGC-GAGGC- -5' |
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8216 | 5' | -60.7 | NC_001978.2 | + | 18569 | 0.69 | 0.232649 |
Target: 5'- gGGCAaggauuCCGUCGGGGcGCGuCUCCGg -3' miRNA: 3'- -CCGUgacu--GGCGGCCUCaCGC-GAGGC- -5' |
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8216 | 5' | -60.7 | NC_001978.2 | + | 9158 | 0.71 | 0.184091 |
Target: 5'- aGGCGCUuaGCCucaGCCGGAGUcGCGC-CCa -3' miRNA: 3'- -CCGUGAc-UGG---CGGCCUCA-CGCGaGGc -5' |
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8216 | 5' | -60.7 | NC_001978.2 | + | 18661 | 0.72 | 0.148671 |
Target: 5'- cGCGCUGauauccguaacGCUGCCGGAGacGCGCcCCGa -3' miRNA: 3'- cCGUGAC-----------UGGCGGCCUCa-CGCGaGGC- -5' |
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8216 | 5' | -60.7 | NC_001978.2 | + | 33572 | 0.72 | 0.144707 |
Target: 5'- cGGCGCcgUGACCGUCGG-GUGUGaCcCCGg -3' miRNA: 3'- -CCGUG--ACUGGCGGCCuCACGC-GaGGC- -5' |
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8216 | 5' | -60.7 | NC_001978.2 | + | 19864 | 0.72 | 0.13744 |
Target: 5'- cGCAUUGGCgccgUGCCGGGGgccgacgcgauucacGCGCUCCGg -3' miRNA: 3'- cCGUGACUG----GCGGCCUCa--------------CGCGAGGC- -5' |
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8216 | 5' | -60.7 | NC_001978.2 | + | 34169 | 0.75 | 0.083105 |
Target: 5'- gGGCaACUGAgCGCCGucGAGUGCGCgcccaacUCCGa -3' miRNA: 3'- -CCG-UGACUgGCGGC--CUCACGCG-------AGGC- -5' |
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8216 | 5' | -60.7 | NC_001978.2 | + | 37414 | 1.09 | 0.000209 |
Target: 5'- aGGCACUGACCGCCGGAGUGCGCUCCGc -3' miRNA: 3'- -CCGUGACUGGCGGCCUCACGCGAGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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