miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8217 3' -54.8 NC_001978.2 + 37815 0.66 0.668989
Target:  5'- gGGGucGCCGUcGucGGGCa---GCGCGCa -3'
miRNA:   3'- gCCU--CGGUA-CuuCCCGauaaCGCGCG- -5'
8217 3' -54.8 NC_001978.2 + 30110 0.66 0.639592
Target:  5'- gCGGAGCCAugcgcUGAgccgccuuacgggcaAGGGCgacaaCGCGUg -3'
miRNA:   3'- -GCCUCGGU-----ACU---------------UCCCGauaacGCGCG- -5'
8217 3' -54.8 NC_001978.2 + 17731 0.66 0.635059
Target:  5'- aGGcgcuuGUCGcGAAGGGCUucgGCGaCGCg -3'
miRNA:   3'- gCCu----CGGUaCUUCCCGAuaaCGC-GCG- -5'
8217 3' -54.8 NC_001978.2 + 38277 0.66 0.635059
Target:  5'- aCGG-GCCAUaGAGGGGCgu---CGUGUa -3'
miRNA:   3'- -GCCuCGGUA-CUUCCCGauaacGCGCG- -5'
8217 3' -54.8 NC_001978.2 + 25802 0.66 0.62373
Target:  5'- gCGGAGCUGgccgaaggucUGAAGGGCUuucaggucAUcGUGUGUg -3'
miRNA:   3'- -GCCUCGGU----------ACUUCCCGA--------UAaCGCGCG- -5'
8217 3' -54.8 NC_001978.2 + 25126 0.66 0.612407
Target:  5'- -aGAGCCGgacGGGGGUUAUcuCGCGCu -3'
miRNA:   3'- gcCUCGGUac-UUCCCGAUAacGCGCG- -5'
8217 3' -54.8 NC_001978.2 + 29413 0.67 0.601103
Target:  5'- gGGGGCCGguccUGggGGucGCUGUaUG-GCGCc -3'
miRNA:   3'- gCCUCGGU----ACuuCC--CGAUA-ACgCGCG- -5'
8217 3' -54.8 NC_001978.2 + 27108 0.67 0.601103
Target:  5'- gCGGAGUCggcgggcauuGUGGccuGGGCgg-UGCGCGg -3'
miRNA:   3'- -GCCUCGG----------UACUu--CCCGauaACGCGCg -5'
8217 3' -54.8 NC_001978.2 + 40563 0.67 0.567396
Target:  5'- uCGGGGUCAcagcGAAGGGCgcccggGUGaCGCu -3'
miRNA:   3'- -GCCUCGGUa---CUUCCCGauaa--CGC-GCG- -5'
8217 3' -54.8 NC_001978.2 + 21617 0.68 0.491056
Target:  5'- aCGGGGCUGUuGGGGGCggagacGgGCGCu -3'
miRNA:   3'- -GCCUCGGUAcUUCCCGauaa--CgCGCG- -5'
8217 3' -54.8 NC_001978.2 + 31503 0.68 0.491056
Target:  5'- aGGGGCacgaCGUGAAGGuGUg---GCGCGUa -3'
miRNA:   3'- gCCUCG----GUACUUCC-CGauaaCGCGCG- -5'
8217 3' -54.8 NC_001978.2 + 19145 0.7 0.42962
Target:  5'- gGGGGCC--GAAGGuGCUAgcGCgaGCGCg -3'
miRNA:   3'- gCCUCGGuaCUUCC-CGAUaaCG--CGCG- -5'
8217 3' -54.8 NC_001978.2 + 37729 1.12 0.000416
Target:  5'- aCGGAGCCAUGAAGGGCUAUUGCGCGCu -3'
miRNA:   3'- -GCCUCGGUACUUCCCGAUAACGCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.