miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8217 5' -59.3 NC_001978.2 + 39381 0.66 0.45428
Target:  5'- gCGGUaa-CCCUCAAUCUUCguggucggcGUGCCGUc -3'
miRNA:   3'- -GCCGcugGGGAGUUGGGAG---------UACGGCG- -5'
8217 5' -59.3 NC_001978.2 + 30365 0.66 0.45428
Target:  5'- gGGCGGCUUCguaCAcgucGCCCUCG-GCgGCu -3'
miRNA:   3'- gCCGCUGGGGa--GU----UGGGAGUaCGgCG- -5'
8217 5' -59.3 NC_001978.2 + 9937 0.66 0.434953
Target:  5'- cCGcGCGugaACgCCUUGAUCUUCGUuGCCGCg -3'
miRNA:   3'- -GC-CGC---UGgGGAGUUGGGAGUA-CGGCG- -5'
8217 5' -59.3 NC_001978.2 + 40343 0.66 0.434953
Target:  5'- cCGGcCGACCCUUCccgcuGCCC-CAggaaGcCCGCu -3'
miRNA:   3'- -GCC-GCUGGGGAGu----UGGGaGUa---C-GGCG- -5'
8217 5' -59.3 NC_001978.2 + 20463 0.66 0.434953
Target:  5'- uCGGcCGACCggcgcgacucgaCUUCGGCCUUC--GCCGCu -3'
miRNA:   3'- -GCC-GCUGG------------GGAGUUGGGAGuaCGGCG- -5'
8217 5' -59.3 NC_001978.2 + 28326 0.66 0.42547
Target:  5'- aCGuCGACaCCCUUcGCCg-CAUGCUGCg -3'
miRNA:   3'- -GCcGCUG-GGGAGuUGGgaGUACGGCG- -5'
8217 5' -59.3 NC_001978.2 + 16002 0.66 0.406879
Target:  5'- uCGGCG-CCCgUCGcGCCC--GUGUCGCc -3'
miRNA:   3'- -GCCGCuGGGgAGU-UGGGagUACGGCG- -5'
8217 5' -59.3 NC_001978.2 + 16081 0.67 0.397776
Target:  5'- aCGGUGACCUagggccggauaUC-ACCCU--UGCCGCu -3'
miRNA:   3'- -GCCGCUGGGg----------AGuUGGGAguACGGCG- -5'
8217 5' -59.3 NC_001978.2 + 33001 0.67 0.379969
Target:  5'- --aCGGCUUCUCAAgCUcCGUGCCGCg -3'
miRNA:   3'- gccGCUGGGGAGUUgGGaGUACGGCG- -5'
8217 5' -59.3 NC_001978.2 + 29206 0.68 0.349287
Target:  5'- aGGCgccGACCCgUgAcggacacagugacaaGCCC-CGUGCCGCg -3'
miRNA:   3'- gCCG---CUGGGgAgU---------------UGGGaGUACGGCG- -5'
8217 5' -59.3 NC_001978.2 + 24872 0.68 0.345989
Target:  5'- aGGCGACCCauCUUGACCa-CGUGCaccCGCu -3'
miRNA:   3'- gCCGCUGGG--GAGUUGGgaGUACG---GCG- -5'
8217 5' -59.3 NC_001978.2 + 39528 0.68 0.327459
Target:  5'- uGGCGGacagaauggcuugcCCCCgggaaAGCCCU--UGCCGCg -3'
miRNA:   3'- gCCGCU--------------GGGGag---UUGGGAguACGGCG- -5'
8217 5' -59.3 NC_001978.2 + 15810 0.68 0.321968
Target:  5'- gGGC-ACCCCgUCGGCCgaCGUGcCCGUu -3'
miRNA:   3'- gCCGcUGGGG-AGUUGGgaGUAC-GGCG- -5'
8217 5' -59.3 NC_001978.2 + 28075 0.68 0.321968
Target:  5'- gGGCGACCUaacggCggUCUUCcgGUCGCu -3'
miRNA:   3'- gCCGCUGGGga---GuuGGGAGuaCGGCG- -5'
8217 5' -59.3 NC_001978.2 + 32285 0.68 0.314243
Target:  5'- uGGCGcgcuGCCgCUCAG-CCUCA-GCCGUg -3'
miRNA:   3'- gCCGC----UGGgGAGUUgGGAGUaCGGCG- -5'
8217 5' -59.3 NC_001978.2 + 1408 0.68 0.306659
Target:  5'- -cGCGACCCggUAACCCUCAcugggaaccGUCGCg -3'
miRNA:   3'- gcCGCUGGGgaGUUGGGAGUa--------CGGCG- -5'
8217 5' -59.3 NC_001978.2 + 16062 0.69 0.299215
Target:  5'- cCGGcCGGaCCCUCcgGACCCUCcgGCCc- -3'
miRNA:   3'- -GCC-GCUgGGGAG--UUGGGAGuaCGGcg -5'
8217 5' -59.3 NC_001978.2 + 26105 0.69 0.299215
Target:  5'- aCGGUGcuCCgCCUCAACCUgggCAcgGUCGCg -3'
miRNA:   3'- -GCCGCu-GG-GGAGUUGGGa--GUa-CGGCG- -5'
8217 5' -59.3 NC_001978.2 + 7401 0.7 0.256834
Target:  5'- aGGCGACCUUcgagccgUCGACCC-CggGCCGa -3'
miRNA:   3'- gCCGCUGGGG-------AGUUGGGaGuaCGGCg -5'
8217 5' -59.3 NC_001978.2 + 17921 0.7 0.226455
Target:  5'- -aGCGACCCUUC-GCCCggCAcGCCGUc -3'
miRNA:   3'- gcCGCUGGGGAGuUGGGa-GUaCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.