miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8218 3' -60.2 NC_001978.2 + 8583 0.66 0.434879
Target:  5'- cGGCGCGaacCGGCcuuGUUCaGGGAuCGaGCGGc -3'
miRNA:   3'- -CCGUGCa--GCCG---CAAG-CCCU-GC-CGCCu -5'
8218 3' -60.2 NC_001978.2 + 14567 0.66 0.40731
Target:  5'- uGCGCGUcCGGCG-UCGGGccuuccgguaACGGUGc- -3'
miRNA:   3'- cCGUGCA-GCCGCaAGCCC----------UGCCGCcu -5'
8218 3' -60.2 NC_001978.2 + 14793 0.66 0.40731
Target:  5'- uGGCGCGgcacuaaCGGCaugaagGUUCGGGACGccgacauuaCGGAa -3'
miRNA:   3'- -CCGUGCa------GCCG------CAAGCCCUGCc--------GCCU- -5'
8218 3' -60.2 NC_001978.2 + 17313 0.67 0.389551
Target:  5'- cGUugGUCGGCGUaucCGGcGGuCGGCGc- -3'
miRNA:   3'- cCGugCAGCCGCAa--GCC-CU-GCCGCcu -5'
8218 3' -60.2 NC_001978.2 + 38057 0.67 0.380863
Target:  5'- cGGUgACGcUCgaauGGCGUUCGcGGuCGGCGGc -3'
miRNA:   3'- -CCG-UGC-AG----CCGCAAGC-CCuGCCGCCu -5'
8218 3' -60.2 NC_001978.2 + 37940 0.67 0.372305
Target:  5'- cGCGCGaCGuuGUaCGGGACGGCGc- -3'
miRNA:   3'- cCGUGCaGCcgCAaGCCCUGCCGCcu -5'
8218 3' -60.2 NC_001978.2 + 25395 0.67 0.363045
Target:  5'- cGGCGCGccacuuaccaucuUCGGCuucuccUUCGGGACGGUc-- -3'
miRNA:   3'- -CCGUGC-------------AGCCGc-----AAGCCCUGCCGccu -5'
8218 3' -60.2 NC_001978.2 + 37874 0.67 0.354766
Target:  5'- gGGCgccgucccguacaACGUCGcGCGUgagCGGGuCGGcCGGu -3'
miRNA:   3'- -CCG-------------UGCAGC-CGCAa--GCCCuGCC-GCCu -5'
8218 3' -60.2 NC_001978.2 + 18500 0.67 0.347429
Target:  5'- aGCACGUCGaGCGaa-GGGaACGGCa-- -3'
miRNA:   3'- cCGUGCAGC-CGCaagCCC-UGCCGccu -5'
8218 3' -60.2 NC_001978.2 + 40051 0.69 0.29411
Target:  5'- gGGUcaGCGUCGGCGUcuUCGGGGaaccauUGGUcaaggGGAa -3'
miRNA:   3'- -CCG--UGCAGCCGCA--AGCCCU------GCCG-----CCU- -5'
8218 3' -60.2 NC_001978.2 + 12836 0.71 0.217911
Target:  5'- aGCACGUCGGCGggUGGcGuCGGCc-- -3'
miRNA:   3'- cCGUGCAGCCGCaaGCC-CuGCCGccu -5'
8218 3' -60.2 NC_001978.2 + 16297 0.71 0.196026
Target:  5'- cGGCuucguguugaccgACGUcaCGGCGUUCGGGuCGGCa-- -3'
miRNA:   3'- -CCG-------------UGCA--GCCGCAAGCCCuGCCGccu -5'
8218 3' -60.2 NC_001978.2 + 5213 0.72 0.177016
Target:  5'- cGCACGaagaaCGGCGUcgucgUCGuGGuCGGCGGAa -3'
miRNA:   3'- cCGUGCa----GCCGCA-----AGC-CCuGCCGCCU- -5'
8218 3' -60.2 NC_001978.2 + 8944 0.73 0.155053
Target:  5'- aGGCGuccgaagaagUGUCGGCGUUCGGcGAacaGGCGaGGg -3'
miRNA:   3'- -CCGU----------GCAGCCGCAAGCC-CUg--CCGC-CU- -5'
8218 3' -60.2 NC_001978.2 + 34311 0.73 0.155053
Target:  5'- cGGCAUGUUGGaCGUUgauacgggcagCGGGuaucCGGCGGGu -3'
miRNA:   3'- -CCGUGCAGCC-GCAA-----------GCCCu---GCCGCCU- -5'
8218 3' -60.2 NC_001978.2 + 19427 0.74 0.135586
Target:  5'- cGuCACGUCGGCGUccgUCGGGACGuaGCGc- -3'
miRNA:   3'- cC-GUGCAGCCGCA---AGCCCUGC--CGCcu -5'
8218 3' -60.2 NC_001978.2 + 30020 0.76 0.097711
Target:  5'- cGGCAagguCGUCGGCGgaCuGGGCGGCGcGAa -3'
miRNA:   3'- -CCGU----GCAGCCGCaaGcCCUGCCGC-CU- -5'
8218 3' -60.2 NC_001978.2 + 15563 0.81 0.039773
Target:  5'- cGUACGUCGGCGUagUCGGG-CGGCaGGGg -3'
miRNA:   3'- cCGUGCAGCCGCA--AGCCCuGCCG-CCU- -5'
8218 3' -60.2 NC_001978.2 + 38582 1.1 0.000244
Target:  5'- gGGCACGUCGGCGUUCGGGACGGCGGAg -3'
miRNA:   3'- -CCGUGCAGCCGCAAGCCCUGCCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.