Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8218 | 3' | -60.2 | NC_001978.2 | + | 8583 | 0.66 | 0.434879 |
Target: 5'- cGGCGCGaacCGGCcuuGUUCaGGGAuCGaGCGGc -3' miRNA: 3'- -CCGUGCa--GCCG---CAAG-CCCU-GC-CGCCu -5' |
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8218 | 3' | -60.2 | NC_001978.2 | + | 14567 | 0.66 | 0.40731 |
Target: 5'- uGCGCGUcCGGCG-UCGGGccuuccgguaACGGUGc- -3' miRNA: 3'- cCGUGCA-GCCGCaAGCCC----------UGCCGCcu -5' |
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8218 | 3' | -60.2 | NC_001978.2 | + | 14793 | 0.66 | 0.40731 |
Target: 5'- uGGCGCGgcacuaaCGGCaugaagGUUCGGGACGccgacauuaCGGAa -3' miRNA: 3'- -CCGUGCa------GCCG------CAAGCCCUGCc--------GCCU- -5' |
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8218 | 3' | -60.2 | NC_001978.2 | + | 17313 | 0.67 | 0.389551 |
Target: 5'- cGUugGUCGGCGUaucCGGcGGuCGGCGc- -3' miRNA: 3'- cCGugCAGCCGCAa--GCC-CU-GCCGCcu -5' |
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8218 | 3' | -60.2 | NC_001978.2 | + | 38057 | 0.67 | 0.380863 |
Target: 5'- cGGUgACGcUCgaauGGCGUUCGcGGuCGGCGGc -3' miRNA: 3'- -CCG-UGC-AG----CCGCAAGC-CCuGCCGCCu -5' |
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8218 | 3' | -60.2 | NC_001978.2 | + | 37940 | 0.67 | 0.372305 |
Target: 5'- cGCGCGaCGuuGUaCGGGACGGCGc- -3' miRNA: 3'- cCGUGCaGCcgCAaGCCCUGCCGCcu -5' |
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8218 | 3' | -60.2 | NC_001978.2 | + | 25395 | 0.67 | 0.363045 |
Target: 5'- cGGCGCGccacuuaccaucuUCGGCuucuccUUCGGGACGGUc-- -3' miRNA: 3'- -CCGUGC-------------AGCCGc-----AAGCCCUGCCGccu -5' |
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8218 | 3' | -60.2 | NC_001978.2 | + | 37874 | 0.67 | 0.354766 |
Target: 5'- gGGCgccgucccguacaACGUCGcGCGUgagCGGGuCGGcCGGu -3' miRNA: 3'- -CCG-------------UGCAGC-CGCAa--GCCCuGCC-GCCu -5' |
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8218 | 3' | -60.2 | NC_001978.2 | + | 18500 | 0.67 | 0.347429 |
Target: 5'- aGCACGUCGaGCGaa-GGGaACGGCa-- -3' miRNA: 3'- cCGUGCAGC-CGCaagCCC-UGCCGccu -5' |
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8218 | 3' | -60.2 | NC_001978.2 | + | 40051 | 0.69 | 0.29411 |
Target: 5'- gGGUcaGCGUCGGCGUcuUCGGGGaaccauUGGUcaaggGGAa -3' miRNA: 3'- -CCG--UGCAGCCGCA--AGCCCU------GCCG-----CCU- -5' |
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8218 | 3' | -60.2 | NC_001978.2 | + | 12836 | 0.71 | 0.217911 |
Target: 5'- aGCACGUCGGCGggUGGcGuCGGCc-- -3' miRNA: 3'- cCGUGCAGCCGCaaGCC-CuGCCGccu -5' |
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8218 | 3' | -60.2 | NC_001978.2 | + | 16297 | 0.71 | 0.196026 |
Target: 5'- cGGCuucguguugaccgACGUcaCGGCGUUCGGGuCGGCa-- -3' miRNA: 3'- -CCG-------------UGCA--GCCGCAAGCCCuGCCGccu -5' |
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8218 | 3' | -60.2 | NC_001978.2 | + | 5213 | 0.72 | 0.177016 |
Target: 5'- cGCACGaagaaCGGCGUcgucgUCGuGGuCGGCGGAa -3' miRNA: 3'- cCGUGCa----GCCGCA-----AGC-CCuGCCGCCU- -5' |
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8218 | 3' | -60.2 | NC_001978.2 | + | 8944 | 0.73 | 0.155053 |
Target: 5'- aGGCGuccgaagaagUGUCGGCGUUCGGcGAacaGGCGaGGg -3' miRNA: 3'- -CCGU----------GCAGCCGCAAGCC-CUg--CCGC-CU- -5' |
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8218 | 3' | -60.2 | NC_001978.2 | + | 34311 | 0.73 | 0.155053 |
Target: 5'- cGGCAUGUUGGaCGUUgauacgggcagCGGGuaucCGGCGGGu -3' miRNA: 3'- -CCGUGCAGCC-GCAA-----------GCCCu---GCCGCCU- -5' |
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8218 | 3' | -60.2 | NC_001978.2 | + | 19427 | 0.74 | 0.135586 |
Target: 5'- cGuCACGUCGGCGUccgUCGGGACGuaGCGc- -3' miRNA: 3'- cC-GUGCAGCCGCA---AGCCCUGC--CGCcu -5' |
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8218 | 3' | -60.2 | NC_001978.2 | + | 30020 | 0.76 | 0.097711 |
Target: 5'- cGGCAagguCGUCGGCGgaCuGGGCGGCGcGAa -3' miRNA: 3'- -CCGU----GCAGCCGCaaGcCCUGCCGC-CU- -5' |
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8218 | 3' | -60.2 | NC_001978.2 | + | 15563 | 0.81 | 0.039773 |
Target: 5'- cGUACGUCGGCGUagUCGGG-CGGCaGGGg -3' miRNA: 3'- cCGUGCAGCCGCA--AGCCCuGCCG-CCU- -5' |
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8218 | 3' | -60.2 | NC_001978.2 | + | 38582 | 1.1 | 0.000244 |
Target: 5'- gGGCACGUCGGCGUUCGGGACGGCGGAg -3' miRNA: 3'- -CCGUGCAGCCGCAAGCCCUGCCGCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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