Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8218 | 5' | -48.1 | NC_001978.2 | + | 38617 | 1.14 | 0.001829 |
Target: 5'- aGUUCGAACGCAUCCUGAACGAAUGCCg -3' miRNA: 3'- -CAAGCUUGCGUAGGACUUGCUUACGG- -5' |
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8218 | 5' | -48.1 | NC_001978.2 | + | 33110 | 0.66 | 0.966382 |
Target: 5'- cUUCGGGCGUggcgugacGUCCUGGgcaagcguuggcACGu-UGCCg -3' miRNA: 3'- cAAGCUUGCG--------UAGGACU------------UGCuuACGG- -5' |
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8218 | 5' | -48.1 | NC_001978.2 | + | 22407 | 0.66 | 0.958508 |
Target: 5'- --cCGGACgGCAaCCggGAACcGAUGCCg -3' miRNA: 3'- caaGCUUG-CGUaGGa-CUUGcUUACGG- -5' |
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8218 | 5' | -48.1 | NC_001978.2 | + | 24635 | 0.67 | 0.939171 |
Target: 5'- --gUGcGCGCA-CCgUGAGCGggUGCg -3' miRNA: 3'- caaGCuUGCGUaGG-ACUUGCuuACGg -5' |
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8218 | 5' | -48.1 | NC_001978.2 | + | 9263 | 0.67 | 0.932982 |
Target: 5'- --aUGGACGUcgcgacgGUCCUGGGCGAcgaaguuggGCCg -3' miRNA: 3'- caaGCUUGCG-------UAGGACUUGCUua-------CGG- -5' |
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8218 | 5' | -48.1 | NC_001978.2 | + | 32125 | 0.67 | 0.931816 |
Target: 5'- -cUCaGGCGCGUCagcuugccgcauggCUGAACGAGgaaGCCg -3' miRNA: 3'- caAGcUUGCGUAG--------------GACUUGCUUa--CGG- -5' |
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8218 | 5' | -48.1 | NC_001978.2 | + | 37288 | 0.69 | 0.851403 |
Target: 5'- --cCGAAgGCAUCCuUGAaguccaucaACGgAGUGCCu -3' miRNA: 3'- caaGCUUgCGUAGG-ACU---------UGC-UUACGG- -5' |
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8218 | 5' | -48.1 | NC_001978.2 | + | 31578 | 0.7 | 0.842202 |
Target: 5'- cGUgCGAAgGCGUUgaGGACGAAgacGCCg -3' miRNA: 3'- -CAaGCUUgCGUAGgaCUUGCUUa--CGG- -5' |
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8218 | 5' | -48.1 | NC_001978.2 | + | 28175 | 0.7 | 0.82207 |
Target: 5'- -cUCGAcgugaucuauacgGCGCG-CCUGAACccGUGCCu -3' miRNA: 3'- caAGCU-------------UGCGUaGGACUUGcuUACGG- -5' |
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8218 | 5' | -48.1 | NC_001978.2 | + | 26120 | 0.79 | 0.363209 |
Target: 5'- --cCGAcgcugcGCGCAUCCUGGGCGAccuuGUGUCg -3' miRNA: 3'- caaGCU------UGCGUAGGACUUGCU----UACGG- -5' |
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8218 | 5' | -48.1 | NC_001978.2 | + | 25868 | 0.75 | 0.575244 |
Target: 5'- -gUCGGcuucACGCugcgCCUGAGCGAAgggcuUGCCg -3' miRNA: 3'- caAGCU----UGCGua--GGACUUGCUU-----ACGG- -5' |
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8218 | 5' | -48.1 | NC_001978.2 | + | 25585 | 0.71 | 0.771378 |
Target: 5'- ---gGGGCGUGaCCUGAGCGGcaaGUGCCc -3' miRNA: 3'- caagCUUGCGUaGGACUUGCU---UACGG- -5' |
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8218 | 5' | -48.1 | NC_001978.2 | + | 22084 | 0.7 | 0.802984 |
Target: 5'- uGUUUGAGCGCcugAUCCgGggUGAGUacgucgGCCg -3' miRNA: 3'- -CAAGCUUGCG---UAGGaCuuGCUUA------CGG- -5' |
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8218 | 5' | -48.1 | NC_001978.2 | + | 26741 | 0.7 | 0.802984 |
Target: 5'- uGUUCGGGCGCAUCaCgaaGACGAc-GCCc -3' miRNA: 3'- -CAAGCUUGCGUAG-Gac-UUGCUuaCGG- -5' |
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8218 | 5' | -48.1 | NC_001978.2 | + | 32708 | 0.7 | 0.802984 |
Target: 5'- cUUCGAGCGCAagaaUCCg--GCGAcgGCUu -3' miRNA: 3'- cAAGCUUGCGU----AGGacuUGCUuaCGG- -5' |
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8218 | 5' | -48.1 | NC_001978.2 | + | 32834 | 0.73 | 0.645696 |
Target: 5'- uGUUCGAgcACGCugaagugccCCUGAGCGAGgauguUGCCc -3' miRNA: 3'- -CAAGCU--UGCGua-------GGACUUGCUU-----ACGG- -5' |
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8218 | 5' | -48.1 | NC_001978.2 | + | 5673 | 0.67 | 0.939171 |
Target: 5'- --cCGGuCGCGUCCguca-GGAUGCCg -3' miRNA: 3'- caaGCUuGCGUAGGacuugCUUACGG- -5' |
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8218 | 5' | -48.1 | NC_001978.2 | + | 5342 | 0.68 | 0.914832 |
Target: 5'- ---gGAACGCucgacagCCUGAGCGAugaGCUg -3' miRNA: 3'- caagCUUGCGua-----GGACUUGCUua-CGG- -5' |
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8218 | 5' | -48.1 | NC_001978.2 | + | 25452 | 0.69 | 0.869006 |
Target: 5'- -gUCGGcgGCAUCCUGggUGAGcgGCa -3' miRNA: 3'- caAGCUugCGUAGGACuuGCUUa-CGg -5' |
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8218 | 5' | -48.1 | NC_001978.2 | + | 16977 | 0.69 | 0.851403 |
Target: 5'- -gUCGGACGCugCCUGAuucaGCGugucgggaAGUGCCg -3' miRNA: 3'- caAGCUUGCGuaGGACU----UGC--------UUACGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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