miRNA display CGI


Results 1 - 20 of 20 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8219 3' -48.5 NC_001978.2 + 17328 0.66 0.961522
Target:  5'- cCGGCG-GUCgGCGCucAGGuguUCUUCGg -3'
miRNA:   3'- aGCUGCgCAG-CGUGuuUCUu--AGAAGC- -5'
8219 3' -48.5 NC_001978.2 + 33061 0.66 0.957825
Target:  5'- cUCGAagaagcuucaccccaGCGUCGUACGccuGAAgcgCUUCGg -3'
miRNA:   3'- -AGCUg--------------CGCAGCGUGUuu-CUUa--GAAGC- -5'
8219 3' -48.5 NC_001978.2 + 20414 0.66 0.9574
Target:  5'- gUCGGcCGaCGUCGC-CGAAGA--CUUCa -3'
miRNA:   3'- -AGCU-GC-GCAGCGuGUUUCUuaGAAGc -5'
8219 3' -48.5 NC_001978.2 + 28641 0.66 0.952987
Target:  5'- cCG-CGCGcuUCGCuCGAAGGAcggCUUCGg -3'
miRNA:   3'- aGCuGCGC--AGCGuGUUUCUUa--GAAGC- -5'
8219 3' -48.5 NC_001978.2 + 19480 0.66 0.950196
Target:  5'- -aGGCGCucuUCGCGCuccgccucagcggcAAGGAUCUUCGc -3'
miRNA:   3'- agCUGCGc--AGCGUGu-------------UUCUUAGAAGC- -5'
8219 3' -48.5 NC_001978.2 + 13819 0.66 0.948276
Target:  5'- gUCGACuucaCGUCGCugAAGGAcugcacgacGUgCUUCGu -3'
miRNA:   3'- -AGCUGc---GCAGCGugUUUCU---------UA-GAAGC- -5'
8219 3' -48.5 NC_001978.2 + 9769 0.66 0.948276
Target:  5'- -aGACGCGUUGCugAAGcucGAcccGUCgUCGg -3'
miRNA:   3'- agCUGCGCAGCGugUUU---CU---UAGaAGC- -5'
8219 3' -48.5 NC_001978.2 + 25289 0.67 0.926372
Target:  5'- uUCaACGCGUCGgGCGAAG-GUCUgacCGu -3'
miRNA:   3'- -AGcUGCGCAGCgUGUUUCuUAGAa--GC- -5'
8219 3' -48.5 NC_001978.2 + 37461 0.67 0.926372
Target:  5'- aCGACGC-UCGCGCAcauucUCUUCa -3'
miRNA:   3'- aGCUGCGcAGCGUGUuucuuAGAAGc -5'
8219 3' -48.5 NC_001978.2 + 28848 0.68 0.91356
Target:  5'- cCGACGUGaagCGCAUGAAGGAcggaUUCGu -3'
miRNA:   3'- aGCUGCGCa--GCGUGUUUCUUag--AAGC- -5'
8219 3' -48.5 NC_001978.2 + 2715 0.68 0.911531
Target:  5'- aCGACGCGUguuccuucgugaugCGCGCGccccGGGcGUCUUCc -3'
miRNA:   3'- aGCUGCGCA--------------GCGUGU----UUCuUAGAAGc -5'
8219 3' -48.5 NC_001978.2 + 6342 0.68 0.90669
Target:  5'- cUCGAccaCGUGUCGCGCAuucccgaucGGGcgCUUCa -3'
miRNA:   3'- -AGCU---GCGCAGCGUGUu--------UCUuaGAAGc -5'
8219 3' -48.5 NC_001978.2 + 35804 0.68 0.899514
Target:  5'- gCGACgGCGUUGC-CAAGGg--CUUCGc -3'
miRNA:   3'- aGCUG-CGCAGCGuGUUUCuuaGAAGC- -5'
8219 3' -48.5 NC_001978.2 + 17808 0.69 0.876198
Target:  5'- cUUGuACGCGUCGC-CGAAGcc-CUUCGc -3'
miRNA:   3'- -AGC-UGCGCAGCGuGUUUCuuaGAAGC- -5'
8219 3' -48.5 NC_001978.2 + 26431 0.7 0.831791
Target:  5'- uUCGACGCGaacgCGCACcuguuGAG-CUUCGc -3'
miRNA:   3'- -AGCUGCGCa---GCGUGuuu--CUUaGAAGC- -5'
8219 3' -48.5 NC_001978.2 + 27113 0.7 0.822159
Target:  5'- cCGGCGCGaaguagCGCACGAacGGAAUgagCUUCa -3'
miRNA:   3'- aGCUGCGCa-----GCGUGUU--UCUUA---GAAGc -5'
8219 3' -48.5 NC_001978.2 + 17857 0.7 0.822159
Target:  5'- aCGGCGUGcCGgGCGAAGggUCg--- -3'
miRNA:   3'- aGCUGCGCaGCgUGUUUCuuAGaagc -5'
8219 3' -48.5 NC_001978.2 + 23578 0.71 0.738069
Target:  5'- uUCGGCGCGUCGUACuc-----CUUCGc -3'
miRNA:   3'- -AGCUGCGCAGCGUGuuucuuaGAAGC- -5'
8219 3' -48.5 NC_001978.2 + 31774 0.74 0.622953
Target:  5'- uUCaGCGCGUCGCGCGAAucGAAUCcgCa -3'
miRNA:   3'- -AGcUGCGCAGCGUGUUU--CUUAGaaGc -5'
8219 3' -48.5 NC_001978.2 + 38823 1.1 0.003771
Target:  5'- cUCGACGCGUCGCACAAAGAAUCUUCGc -3'
miRNA:   3'- -AGCUGCGCAGCGUGUUUCUUAGAAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.