Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8220 | 5' | -55.5 | NC_001978.2 | + | 38994 | 1.12 | 0.000402 |
Target: 5'- aCAAGCUUGCGCACUCGACCACUCCCCu -3' miRNA: 3'- -GUUCGAACGCGUGAGCUGGUGAGGGG- -5' |
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8220 | 5' | -55.5 | NC_001978.2 | + | 25444 | 0.76 | 0.152577 |
Target: 5'- cCAGGCUgagGCGCugggGCUUcGCUACUCCCCc -3' miRNA: 3'- -GUUCGAa--CGCG----UGAGcUGGUGAGGGG- -5' |
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8220 | 5' | -55.5 | NC_001978.2 | + | 6158 | 0.73 | 0.249465 |
Target: 5'- aGAGCUUcGCGCGCUCGACgGucuugacgaCUCCgCg -3' miRNA: 3'- gUUCGAA-CGCGUGAGCUGgU---------GAGGgG- -5' |
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8220 | 5' | -55.5 | NC_001978.2 | + | 7629 | 0.72 | 0.276954 |
Target: 5'- uCAAGCgacgucGCGUcgaACUCGACCACgcugCCCg -3' miRNA: 3'- -GUUCGaa----CGCG---UGAGCUGGUGa---GGGg -5' |
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8220 | 5' | -55.5 | NC_001978.2 | + | 8788 | 0.72 | 0.284194 |
Target: 5'- gAAGCUccaugccGCGCACgucCGACCACgucaaCCCCc -3' miRNA: 3'- gUUCGAa------CGCGUGa--GCUGGUGa----GGGG- -5' |
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8220 | 5' | -55.5 | NC_001978.2 | + | 34245 | 0.72 | 0.291582 |
Target: 5'- gGAGUUgggcGCGCACUCGACggCGCUCaguugCCCa -3' miRNA: 3'- gUUCGAa---CGCGUGAGCUG--GUGAG-----GGG- -5' |
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8220 | 5' | -55.5 | NC_001978.2 | + | 35752 | 0.71 | 0.314645 |
Target: 5'- gCAAcGCcguCGCccaGCUCGACCACUCCCg -3' miRNA: 3'- -GUU-CGaacGCG---UGAGCUGGUGAGGGg -5' |
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8220 | 5' | -55.5 | NC_001978.2 | + | 34651 | 0.71 | 0.322634 |
Target: 5'- gGAGCUUGCGCGCcgucucaagCGucauacucACCAUUuCCCCa -3' miRNA: 3'- gUUCGAACGCGUGa--------GC--------UGGUGA-GGGG- -5' |
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8220 | 5' | -55.5 | NC_001978.2 | + | 37741 | 0.71 | 0.339061 |
Target: 5'- aGGGCUauUGCGCGCUgccCGACgACggcgaCCCCu -3' miRNA: 3'- gUUCGA--ACGCGUGA---GCUGgUGa----GGGG- -5' |
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8220 | 5' | -55.5 | NC_001978.2 | + | 8458 | 0.7 | 0.364823 |
Target: 5'- gCAGGCUUGCGCugg-GGCauuaGCUCUCCa -3' miRNA: 3'- -GUUCGAACGCGugagCUGg---UGAGGGG- -5' |
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8220 | 5' | -55.5 | NC_001978.2 | + | 15943 | 0.7 | 0.373706 |
Target: 5'- aCGGGCgcgacggGCGCcgACUCGAcguucCCGgUCCCCa -3' miRNA: 3'- -GUUCGaa-----CGCG--UGAGCU-----GGUgAGGGG- -5' |
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8220 | 5' | -55.5 | NC_001978.2 | + | 38517 | 0.69 | 0.410676 |
Target: 5'- uGGGCUUGCuGCGCUCGAaucucgCGCUCgCg -3' miRNA: 3'- gUUCGAACG-CGUGAGCUg-----GUGAGgGg -5' |
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8220 | 5' | -55.5 | NC_001978.2 | + | 36574 | 0.69 | 0.429992 |
Target: 5'- -uGGCa-GUGCACUUGAUCGCUCCg- -3' miRNA: 3'- guUCGaaCGCGUGAGCUGGUGAGGgg -5' |
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8220 | 5' | -55.5 | NC_001978.2 | + | 32714 | 0.68 | 0.490959 |
Target: 5'- aGGGCgucaGCGuCAgUCGGCCGgUCCCg -3' miRNA: 3'- gUUCGaa--CGC-GUgAGCUGGUgAGGGg -5' |
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8220 | 5' | -55.5 | NC_001978.2 | + | 16183 | 0.68 | 0.512167 |
Target: 5'- aCGGGCUUGUuCcgACU-GACCaACUCCCCc -3' miRNA: 3'- -GUUCGAACGcG--UGAgCUGG-UGAGGGG- -5' |
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8220 | 5' | -55.5 | NC_001978.2 | + | 31689 | 0.68 | 0.512167 |
Target: 5'- uCGAGUUgcUGUGCucACUCG-CCAUgCCCCa -3' miRNA: 3'- -GUUCGA--ACGCG--UGAGCuGGUGaGGGG- -5' |
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8220 | 5' | -55.5 | NC_001978.2 | + | 11459 | 0.67 | 0.544655 |
Target: 5'- gCAAGCggucgGCGcCGCUCGACCugaACUUUgCg -3' miRNA: 3'- -GUUCGaa---CGC-GUGAGCUGG---UGAGGgG- -5' |
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8220 | 5' | -55.5 | NC_001978.2 | + | 17260 | 0.67 | 0.560047 |
Target: 5'- gAAGgUcGCGCACcaagccugauucugCGACCACUcaagCCCCg -3' miRNA: 3'- gUUCgAaCGCGUGa-------------GCUGGUGA----GGGG- -5' |
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8220 | 5' | -55.5 | NC_001978.2 | + | 26537 | 0.67 | 0.566681 |
Target: 5'- gGAGCUUGCccGUACgaggUCGACCACgCCg- -3' miRNA: 3'- gUUCGAACG--CGUG----AGCUGGUGaGGgg -5' |
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8220 | 5' | -55.5 | NC_001978.2 | + | 17316 | 0.67 | 0.577782 |
Target: 5'- gAAGCcgUGCGCGgguagugCG-CCgACUCCCCa -3' miRNA: 3'- gUUCGa-ACGCGUga-----GCuGG-UGAGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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