miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8220 5' -55.5 NC_001978.2 + 35752 0.71 0.314645
Target:  5'- gCAAcGCcguCGCccaGCUCGACCACUCCCg -3'
miRNA:   3'- -GUU-CGaacGCG---UGAGCUGGUGAGGGg -5'
8220 5' -55.5 NC_001978.2 + 34245 0.72 0.291582
Target:  5'- gGAGUUgggcGCGCACUCGACggCGCUCaguugCCCa -3'
miRNA:   3'- gUUCGAa---CGCGUGAGCUG--GUGAG-----GGG- -5'
8220 5' -55.5 NC_001978.2 + 8788 0.72 0.284194
Target:  5'- gAAGCUccaugccGCGCACgucCGACCACgucaaCCCCc -3'
miRNA:   3'- gUUCGAa------CGCGUGa--GCUGGUGa----GGGG- -5'
8220 5' -55.5 NC_001978.2 + 7629 0.72 0.276954
Target:  5'- uCAAGCgacgucGCGUcgaACUCGACCACgcugCCCg -3'
miRNA:   3'- -GUUCGaa----CGCG---UGAGCUGGUGa---GGGg -5'
8220 5' -55.5 NC_001978.2 + 6158 0.73 0.249465
Target:  5'- aGAGCUUcGCGCGCUCGACgGucuugacgaCUCCgCg -3'
miRNA:   3'- gUUCGAA-CGCGUGAGCUGgU---------GAGGgG- -5'
8220 5' -55.5 NC_001978.2 + 25444 0.76 0.152577
Target:  5'- cCAGGCUgagGCGCugggGCUUcGCUACUCCCCc -3'
miRNA:   3'- -GUUCGAa--CGCG----UGAGcUGGUGAGGGG- -5'
8220 5' -55.5 NC_001978.2 + 38994 1.12 0.000402
Target:  5'- aCAAGCUUGCGCACUCGACCACUCCCCu -3'
miRNA:   3'- -GUUCGAACGCGUGAGCUGGUGAGGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.