miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8221 5' -57.9 NC_001978.2 + 12851 0.66 0.510571
Target:  5'- gGCGucGGCCGuaucgcgcuuauGUCGUCGGGCUCGaUUGAg -3'
miRNA:   3'- aCGC--CUGGC------------UAGUAGCUCGGGC-GACU- -5'
8221 5' -57.9 NC_001978.2 + 32860 0.66 0.500132
Target:  5'- cGCGcacaaggaagguGACCGAcgCAuguUCGAGCaCGCUGAa -3'
miRNA:   3'- aCGC------------CUGGCUa-GU---AGCUCGgGCGACU- -5'
8221 5' -57.9 NC_001978.2 + 17607 0.66 0.488759
Target:  5'- gGCGGcUCGAcCA-CGccugacaAGCCCGCUGAg -3'
miRNA:   3'- aCGCCuGGCUaGUaGC-------UCGGGCGACU- -5'
8221 5' -57.9 NC_001978.2 + 24364 0.66 0.479545
Target:  5'- aUGCauacgGGAUUGuUCAUCGGGCCCgacGCUGc -3'
miRNA:   3'- -ACG-----CCUGGCuAGUAGCUCGGG---CGACu -5'
8221 5' -57.9 NC_001978.2 + 29412 0.67 0.439679
Target:  5'- aGgGGGCCGGUCcUgGGGgUCGCUGu -3'
miRNA:   3'- aCgCCUGGCUAGuAgCUCgGGCGACu -5'
8221 5' -57.9 NC_001978.2 + 9647 0.67 0.430009
Target:  5'- gGCGGACCGGUCG-CGAaggacGCCCuagacaagacGCUuGAc -3'
miRNA:   3'- aCGCCUGGCUAGUaGCU-----CGGG----------CGA-CU- -5'
8221 5' -57.9 NC_001978.2 + 12280 0.67 0.430009
Target:  5'- aGCGGACgGcuUCAaCGGGCUCGCgauUGAg -3'
miRNA:   3'- aCGCCUGgCu-AGUaGCUCGGGCG---ACU- -5'
8221 5' -57.9 NC_001978.2 + 14568 0.68 0.392621
Target:  5'- gUGCGcGuCCGG-CGUCGGGCCUuccgguaacgguGCUGAa -3'
miRNA:   3'- -ACGC-CuGGCUaGUAGCUCGGG------------CGACU- -5'
8221 5' -57.9 NC_001978.2 + 14277 0.68 0.374737
Target:  5'- ---aGGCCGGUCAcguucgCGAGCCCGCagGAu -3'
miRNA:   3'- acgcCUGGCUAGUa-----GCUCGGGCGa-CU- -5'
8221 5' -57.9 NC_001978.2 + 12375 0.68 0.366003
Target:  5'- aGCGGcaggcguacccuGCaCGAccUCAaucgCGAGCCCGUUGAa -3'
miRNA:   3'- aCGCC------------UG-GCU--AGUa---GCUCGGGCGACU- -5'
8221 5' -57.9 NC_001978.2 + 35725 0.69 0.340656
Target:  5'- gUGCcGACCGGUCuucgggGUCGAGCUgggCGCUGu -3'
miRNA:   3'- -ACGcCUGGCUAG------UAGCUCGG---GCGACu -5'
8221 5' -57.9 NC_001978.2 + 16024 0.69 0.332494
Target:  5'- cUGgGGACCGGgaacCGUCGAGUCgGCg-- -3'
miRNA:   3'- -ACgCCUGGCUa---GUAGCUCGGgCGacu -5'
8221 5' -57.9 NC_001978.2 + 32172 0.69 0.316604
Target:  5'- gGCGGACgGGU-AUCGAcggacgcgcGCaCCGCUGAg -3'
miRNA:   3'- aCGCCUGgCUAgUAGCU---------CG-GGCGACU- -5'
8221 5' -57.9 NC_001978.2 + 37386 0.7 0.28656
Target:  5'- -aCGGcGCCGAcCAUCGAuaGCgCCGCUGAg -3'
miRNA:   3'- acGCC-UGGCUaGUAGCU--CG-GGCGACU- -5'
8221 5' -57.9 NC_001978.2 + 39447 0.71 0.258808
Target:  5'- aGCGGGCuCGAUgAUCG-GUCCGCa-- -3'
miRNA:   3'- aCGCCUG-GCUAgUAGCuCGGGCGacu -5'
8221 5' -57.9 NC_001978.2 + 39382 1.09 0.000397
Target:  5'- uUGCGGACCGAUCAUCGAGCCCGCUGAg -3'
miRNA:   3'- -ACGCCUGGCUAGUAGCUCGGGCGACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.