miRNA display CGI


Results 41 - 60 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8222 5' -55.4 NC_001978.2 + 25401 0.68 0.520983
Target:  5'- aUGCCGccGACUac--GCCGCCGAccgguucgGGCUCg -3'
miRNA:   3'- -ACGGC--UUGAacuuCGGCGGCU--------UCGGG- -5'
8222 5' -55.4 NC_001978.2 + 20362 0.68 0.520983
Target:  5'- cGCCGGucACcccgGAAGCCgaagcggcgaagGCCGAAGUCg -3'
miRNA:   3'- aCGGCU--UGaa--CUUCGG------------CGGCUUCGGg -5'
8222 5' -55.4 NC_001978.2 + 3047 0.68 0.510246
Target:  5'- cGCCG-----GAAGCCGCaaCGgcGCCCa -3'
miRNA:   3'- aCGGCuugaaCUUCGGCG--GCuuCGGG- -5'
8222 5' -55.4 NC_001978.2 + 26274 0.68 0.499602
Target:  5'- gGCCGGacgcguACUUGAuccGGCCGUC--AGUCCa -3'
miRNA:   3'- aCGGCU------UGAACU---UCGGCGGcuUCGGG- -5'
8222 5' -55.4 NC_001978.2 + 18351 0.68 0.499602
Target:  5'- uUGCCGcccGGCUUGcuguGGUCGCCcauGgcGCCCc -3'
miRNA:   3'- -ACGGC---UUGAACu---UCGGCGG---CuuCGGG- -5'
8222 5' -55.4 NC_001978.2 + 30460 0.68 0.499602
Target:  5'- uUGCCGAcacGC-UGAAGCaCuaCGAcgaagAGCCCg -3'
miRNA:   3'- -ACGGCU---UGaACUUCG-GcgGCU-----UCGGG- -5'
8222 5' -55.4 NC_001978.2 + 14489 0.68 0.489058
Target:  5'- aGCCGAACgggauuccaUGAAGCCaaCGGAcguaaaccguGCCCa -3'
miRNA:   3'- aCGGCUUGa--------ACUUCGGcgGCUU----------CGGG- -5'
8222 5' -55.4 NC_001978.2 + 13554 0.68 0.489058
Target:  5'- aGCgGAAUa-GAAGCCGCCGucaucuucggcAAGCuCCg -3'
miRNA:   3'- aCGgCUUGaaCUUCGGCGGC-----------UUCG-GG- -5'
8222 5' -55.4 NC_001978.2 + 9885 0.68 0.489058
Target:  5'- cUGCCG-ACUUcgccgcGCCGUCGAccuuGCCCa -3'
miRNA:   3'- -ACGGCuUGAAcuu---CGGCGGCUu---CGGG- -5'
8222 5' -55.4 NC_001978.2 + 16753 0.68 0.488009
Target:  5'- cGCCGAcauGCgUUGAccgcauagcggcaAGCgCGCCGGuuuccuGCCCa -3'
miRNA:   3'- aCGGCU---UG-AACU-------------UCG-GCGGCUu-----CGGG- -5'
8222 5' -55.4 NC_001978.2 + 1086 0.68 0.478619
Target:  5'- uUGCCGAcgccgcuuGCUggGAAGCCuuccggGUCGucGCCCc -3'
miRNA:   3'- -ACGGCU--------UGAa-CUUCGG------CGGCuuCGGG- -5'
8222 5' -55.4 NC_001978.2 + 22582 0.68 0.478619
Target:  5'- aGCCGGucGCacgGAAGgCGUCGggGCgCa -3'
miRNA:   3'- aCGGCU--UGaa-CUUCgGCGGCuuCGgG- -5'
8222 5' -55.4 NC_001978.2 + 11300 0.68 0.472409
Target:  5'- cGCUGAcGCUUGAGGUauacgggcgcgaccgCGCUGAguucacggaAGCCCu -3'
miRNA:   3'- aCGGCU-UGAACUUCG---------------GCGGCU---------UCGGG- -5'
8222 5' -55.4 NC_001978.2 + 21059 0.68 0.468291
Target:  5'- gUGCCGGAagagauccuuacCgaGAAGCUugaGCCGAAGgCCg -3'
miRNA:   3'- -ACGGCUU------------GaaCUUCGG---CGGCUUCgGG- -5'
8222 5' -55.4 NC_001978.2 + 13920 0.69 0.458078
Target:  5'- cGCUGGGCUUGAAGgCGcCCGGAuaCa -3'
miRNA:   3'- aCGGCUUGAACUUCgGC-GGCUUcgGg -5'
8222 5' -55.4 NC_001978.2 + 40341 0.69 0.447987
Target:  5'- gGCCGAcccuucccGCUgccccagGAAGcCCGCUGugcGCCCg -3'
miRNA:   3'- aCGGCU--------UGAa------CUUC-GGCGGCuu-CGGG- -5'
8222 5' -55.4 NC_001978.2 + 13443 0.69 0.447987
Target:  5'- aGUaCGAAUUgaagGuuGUCGCCGAAGCCa -3'
miRNA:   3'- aCG-GCUUGAa---CuuCGGCGGCUUCGGg -5'
8222 5' -55.4 NC_001978.2 + 35728 0.69 0.447987
Target:  5'- cUGCCGcGCcaugcGAAGCCcuuggcaacGCCGucGCCCa -3'
miRNA:   3'- -ACGGCuUGaa---CUUCGG---------CGGCuuCGGG- -5'
8222 5' -55.4 NC_001978.2 + 23683 0.69 0.447987
Target:  5'- cGCCaaucucgaacuuGAGCUugUGGAGUacaCGCCGAagcguGGCCCg -3'
miRNA:   3'- aCGG------------CUUGA--ACUUCG---GCGGCU-----UCGGG- -5'
8222 5' -55.4 NC_001978.2 + 20812 0.69 0.446984
Target:  5'- cGUCGAACgcgcGGAGCCagucaacaaggacGuCCGAAGCCUu -3'
miRNA:   3'- aCGGCUUGaa--CUUCGG-------------C-GGCUUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.