Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8223 | 3' | -59 | NC_001978.2 | + | 40000 | 1.08 | 0.000405 |
Target: 5'- gACGCUGACCCGACCGGCCCUAAGUCGu -3' miRNA: 3'- -UGCGACUGGGCUGGCCGGGAUUCAGC- -5' |
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8223 | 3' | -59 | NC_001978.2 | + | 39345 | 0.7 | 0.272925 |
Target: 5'- aGCGC-GACCCGAucacgcuCCGGCC---GGUCGa -3' miRNA: 3'- -UGCGaCUGGGCU-------GGCCGGgauUCAGC- -5' |
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8223 | 3' | -59 | NC_001978.2 | + | 39161 | 0.66 | 0.448902 |
Target: 5'- gACGCUGACgCCGuGCCGaCCCgGGG-CGa -3' miRNA: 3'- -UGCGACUG-GGC-UGGCcGGGaUUCaGC- -5' |
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8223 | 3' | -59 | NC_001978.2 | + | 38615 | 0.68 | 0.341274 |
Target: 5'- uCGCUGaaauGCCCGAcgaaccugaaCCGGCCCcc-GUCGc -3' miRNA: 3'- uGCGAC----UGGGCU----------GGCCGGGauuCAGC- -5' |
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8223 | 3' | -59 | NC_001978.2 | + | 36651 | 0.66 | 0.420233 |
Target: 5'- gACGCUGAgcgggaagcCCUGAgCGcCCCUGAGcCGg -3' miRNA: 3'- -UGCGACU---------GGGCUgGCcGGGAUUCaGC- -5' |
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8223 | 3' | -59 | NC_001978.2 | + | 35733 | 0.71 | 0.234764 |
Target: 5'- -gGCUucgaGugCCGACCGGUCUUcgGGGUCGa -3' miRNA: 3'- ugCGA----CugGGCUGGCCGGGA--UUCAGC- -5' |
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8223 | 3' | -59 | NC_001978.2 | + | 33668 | 0.68 | 0.317448 |
Target: 5'- uCGCUguggGACUCGAugcauuCCGGCCCgGGGUCa -3' miRNA: 3'- uGCGA----CUGGGCU------GGCCGGGaUUCAGc -5' |
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8223 | 3' | -59 | NC_001978.2 | + | 29486 | 0.73 | 0.166385 |
Target: 5'- gGCGCcauacagcGACCCccagGACCGGCCCccUAGGUCa -3' miRNA: 3'- -UGCGa-------CUGGG----CUGGCCGGG--AUUCAGc -5' |
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8223 | 3' | -59 | NC_001978.2 | + | 29401 | 0.83 | 0.031146 |
Target: 5'- gACGCUGACCUagggGGCCGGUCCUGggGGUCGc -3' miRNA: 3'- -UGCGACUGGG----CUGGCCGGGAU--UCAGC- -5' |
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8223 | 3' | -59 | NC_001978.2 | + | 26019 | 0.66 | 0.458696 |
Target: 5'- -gGCUcGACCCguccgcGACCGuGCCC-AGGUUGa -3' miRNA: 3'- ugCGA-CUGGG------CUGGC-CGGGaUUCAGC- -5' |
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8223 | 3' | -59 | NC_001978.2 | + | 23814 | 0.66 | 0.420233 |
Target: 5'- aGCGCUcGACCCGgcgucGCCGGaagCCUGGG-Ca -3' miRNA: 3'- -UGCGA-CUGGGC-----UGGCCg--GGAUUCaGc -5' |
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8223 | 3' | -59 | NC_001978.2 | + | 23324 | 0.66 | 0.429667 |
Target: 5'- gACGUguucaCCGACCGGCCg-AAGUCc -3' miRNA: 3'- -UGCGacug-GGCUGGCCGGgaUUCAGc -5' |
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8223 | 3' | -59 | NC_001978.2 | + | 22978 | 0.66 | 0.448902 |
Target: 5'- --aUUGGUCCGGCCGGaCCCU-AGUCGc -3' miRNA: 3'- ugcGACUGGGCUGGCC-GGGAuUCAGC- -5' |
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8223 | 3' | -59 | NC_001978.2 | + | 22350 | 0.66 | 0.458696 |
Target: 5'- -gGCUucCCgGACCGGUCCggcGUCGg -3' miRNA: 3'- ugCGAcuGGgCUGGCCGGGauuCAGC- -5' |
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8223 | 3' | -59 | NC_001978.2 | + | 22125 | 0.74 | 0.14129 |
Target: 5'- cGCGCUGAUCUGAC--GCCCUAcGUCGa -3' miRNA: 3'- -UGCGACUGGGCUGgcCGGGAUuCAGC- -5' |
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8223 | 3' | -59 | NC_001978.2 | + | 21628 | 0.69 | 0.302273 |
Target: 5'- gUGCUGACCCGACgGGgCUguUGGGggCGg -3' miRNA: 3'- uGCGACUGGGCUGgCCgGG--AUUCa-GC- -5' |
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8223 | 3' | -59 | NC_001978.2 | + | 20239 | 0.67 | 0.392699 |
Target: 5'- gGCGCUGAUCUGAgCGucaacGUCCUGGGUg- -3' miRNA: 3'- -UGCGACUGGGCUgGC-----CGGGAUUCAgc -5' |
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8223 | 3' | -59 | NC_001978.2 | + | 17183 | 0.66 | 0.458696 |
Target: 5'- aAUGUccGCCCGACCGGCCUUcgugauAGcCGa -3' miRNA: 3'- -UGCGacUGGGCUGGCCGGGAu-----UCaGC- -5' |
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8223 | 3' | -59 | NC_001978.2 | + | 16165 | 0.67 | 0.366365 |
Target: 5'- gACGUcGGCagCGGcaagggugauauCCGGCCCUAGGUCa -3' miRNA: 3'- -UGCGaCUGg-GCU------------GGCCGGGAUUCAGc -5' |
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8223 | 3' | -59 | NC_001978.2 | + | 15955 | 0.66 | 0.468603 |
Target: 5'- gGCGCcGACUCGAcguucCCGGUCCccaGGGUCc -3' miRNA: 3'- -UGCGaCUGGGCU-----GGCCGGGa--UUCAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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