miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8223 5' -53.6 NC_001978.2 + 15724 0.66 0.756961
Target:  5'- aCG-GUCAcuauGUGGGCGAaguCGGGCgGCGUGUg -3'
miRNA:   3'- -GCgCAGU----CAUCUGCU---GUUCG-CGCACA- -5'
8223 5' -53.6 NC_001978.2 + 29447 0.66 0.746307
Target:  5'- aGCGUCGGc-GACGACGGGCaCGc-- -3'
miRNA:   3'- gCGCAGUCauCUGCUGUUCGcGCaca -5'
8223 5' -53.6 NC_001978.2 + 15555 0.66 0.746307
Target:  5'- gGCG-UAGUcGGGCGGCAGGgGCGa-- -3'
miRNA:   3'- gCGCaGUCA-UCUGCUGUUCgCGCaca -5'
8223 5' -53.6 NC_001978.2 + 35567 0.66 0.724642
Target:  5'- gCGCGUUGGgGGACGugaagGCGAGCGCu--- -3'
miRNA:   3'- -GCGCAGUCaUCUGC-----UGUUCGCGcaca -5'
8223 5' -53.6 NC_001978.2 + 29101 0.67 0.680241
Target:  5'- uCGCGUUGGcAG-CGugAAGCGCGcGg -3'
miRNA:   3'- -GCGCAGUCaUCuGCugUUCGCGCaCa -5'
8223 5' -53.6 NC_001978.2 + 12814 0.67 0.668989
Target:  5'- gGCGUCGGgucAGACGuACGgaagcacgucGGCGgGUGg -3'
miRNA:   3'- gCGCAGUCa--UCUGC-UGU----------UCGCgCACa -5'
8223 5' -53.6 NC_001978.2 + 22955 0.67 0.657701
Target:  5'- gCGCGUCAcgGGcgucACGAUGAGCGCGa-- -3'
miRNA:   3'- -GCGCAGUcaUC----UGCUGUUCGCGCaca -5'
8223 5' -53.6 NC_001978.2 + 4288 0.68 0.589826
Target:  5'- gCGCGUC---GGAUGACGGGCGCa--- -3'
miRNA:   3'- -GCGCAGucaUCUGCUGUUCGCGcaca -5'
8223 5' -53.6 NC_001978.2 + 39424 0.68 0.589826
Target:  5'- gGCGUgGuUGGACGGCAgggGGCGCGg-- -3'
miRNA:   3'- gCGCAgUcAUCUGCUGU---UCGCGCaca -5'
8223 5' -53.6 NC_001978.2 + 27519 0.68 0.589826
Target:  5'- cCGgGacCGGUAGcgGCGGCAGGCGCGUc- -3'
miRNA:   3'- -GCgCa-GUCAUC--UGCUGUUCGCGCAca -5'
8223 5' -53.6 NC_001978.2 + 31586 0.69 0.578588
Target:  5'- gGCGUUga-GGACGAagacgccguUAAGCGCGUGUg -3'
miRNA:   3'- gCGCAGucaUCUGCU---------GUUCGCGCACA- -5'
8223 5' -53.6 NC_001978.2 + 26253 0.69 0.578588
Target:  5'- gGcCGUCAGUccAUGccACAAGCGCGUGa -3'
miRNA:   3'- gC-GCAGUCAucUGC--UGUUCGCGCACa -5'
8223 5' -53.6 NC_001978.2 + 10881 0.69 0.577467
Target:  5'- gGCGUCcgGGUGGACccguguuGGCGAGCGUGg-- -3'
miRNA:   3'- gCGCAG--UCAUCUG-------CUGUUCGCGCaca -5'
8223 5' -53.6 NC_001978.2 + 32359 0.69 0.545189
Target:  5'- gGC-UCAGUAGGC-AC-GGCGCGUGa -3'
miRNA:   3'- gCGcAGUCAUCUGcUGuUCGCGCACa -5'
8223 5' -53.6 NC_001978.2 + 6637 0.69 0.534189
Target:  5'- gCGCGaCGGUAGACGACGAccuuGCcccCGUGg -3'
miRNA:   3'- -GCGCaGUCAUCUGCUGUU----CGc--GCACa -5'
8223 5' -53.6 NC_001978.2 + 28292 0.7 0.491056
Target:  5'- aGCGUCGGccGGAUGcuCAGGCGCGcGUg -3'
miRNA:   3'- gCGCAGUCa-UCUGCu-GUUCGCGCaCA- -5'
8223 5' -53.6 NC_001978.2 + 29207 0.7 0.480522
Target:  5'- aGUGUCAGU---CGGC-AGCGCGUGa -3'
miRNA:   3'- gCGCAGUCAucuGCUGuUCGCGCACa -5'
8223 5' -53.6 NC_001978.2 + 15058 0.71 0.459794
Target:  5'- aGCGUUAGgucgucCGACAAGCGCuGUGa -3'
miRNA:   3'- gCGCAGUCaucu--GCUGUUCGCG-CACa -5'
8223 5' -53.6 NC_001978.2 + 40037 1.07 0.00147
Target:  5'- gCGCGUCAGUAGACGACAAGCGCGUGUu -3'
miRNA:   3'- -GCGCAGUCAUCUGCUGUUCGCGCACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.