Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8224 | 3' | -54.5 | NC_001978.2 | + | 40123 | 1.09 | 0.000819 |
Target: 5'- gGAACGCCCAUCGAGAAGCGCGCUUCGa -3' miRNA: 3'- -CUUGCGGGUAGCUCUUCGCGCGAAGC- -5' |
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8224 | 3' | -54.5 | NC_001978.2 | + | 40203 | 0.75 | 0.20319 |
Target: 5'- --uCGCCCAcgUGAucGAAGCGCGCUUCu -3' miRNA: 3'- cuuGCGGGUa-GCU--CUUCGCGCGAAGc -5' |
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8224 | 3' | -54.5 | NC_001978.2 | + | 6418 | 0.73 | 0.294799 |
Target: 5'- aAGCGCCCgAUCGGGAAuGCGCGacacguggUCGa -3' miRNA: 3'- cUUGCGGG-UAGCUCUU-CGCGCga------AGC- -5' |
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8224 | 3' | -54.5 | NC_001978.2 | + | 19419 | 0.72 | 0.342955 |
Target: 5'- cGGCGUCCGUCGGGAcGUaGCGCUcCGa -3' miRNA: 3'- cUUGCGGGUAGCUCUuCG-CGCGAaGC- -5' |
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8224 | 3' | -54.5 | NC_001978.2 | + | 13212 | 0.71 | 0.378081 |
Target: 5'- gGAACGCCCAggcuGAAGCGUGUcggggUCGg -3' miRNA: 3'- -CUUGCGGGUagcuCUUCGCGCGa----AGC- -5' |
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8224 | 3' | -54.5 | NC_001978.2 | + | 2548 | 0.71 | 0.396528 |
Target: 5'- gGAACGCCUcaacCGGGAAGCcGUcgGCUUCGa -3' miRNA: 3'- -CUUGCGGGua--GCUCUUCG-CG--CGAAGC- -5' |
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8224 | 3' | -54.5 | NC_001978.2 | + | 8871 | 0.71 | 0.405967 |
Target: 5'- --uCGCCCc-CGAccGGCGCGCUUCGu -3' miRNA: 3'- cuuGCGGGuaGCUcuUCGCGCGAAGC- -5' |
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8224 | 3' | -54.5 | NC_001978.2 | + | 32300 | 0.69 | 0.475777 |
Target: 5'- uGAGCGCUUcgCGAauGGCGCGCUg-- -3' miRNA: 3'- -CUUGCGGGuaGCUcuUCGCGCGAagc -5' |
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8224 | 3' | -54.5 | NC_001978.2 | + | 14633 | 0.69 | 0.475777 |
Target: 5'- aGAGCGCcaCCGUC-AGggGCagcgacguucucGCGCUUCGu -3' miRNA: 3'- -CUUGCG--GGUAGcUCuuCG------------CGCGAAGC- -5' |
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8224 | 3' | -54.5 | NC_001978.2 | + | 4349 | 0.69 | 0.496808 |
Target: 5'- -uGCGCCCGUCauccGAcGCGCGCUcuUCa -3' miRNA: 3'- cuUGCGGGUAGcu--CUuCGCGCGA--AGc -5' |
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8224 | 3' | -54.5 | NC_001978.2 | + | 34176 | 0.69 | 0.507479 |
Target: 5'- uGAGCG-CCGUCGAGu-GCGCGCc--- -3' miRNA: 3'- -CUUGCgGGUAGCUCuuCGCGCGaagc -5' |
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8224 | 3' | -54.5 | NC_001978.2 | + | 38754 | 0.68 | 0.540044 |
Target: 5'- -cGCGUCCAUgaccuucaggcgCGAGAAGCGCGacacgUCa -3' miRNA: 3'- cuUGCGGGUA------------GCUCUUCGCGCga---AGc -5' |
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8224 | 3' | -54.5 | NC_001978.2 | + | 21146 | 0.68 | 0.562142 |
Target: 5'- -cGCGCCCAggUCGAcaAGGCcgguaaGCGCUUCGc -3' miRNA: 3'- cuUGCGGGU--AGCUc-UUCG------CGCGAAGC- -5' |
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8224 | 3' | -54.5 | NC_001978.2 | + | 25039 | 0.68 | 0.573284 |
Target: 5'- cAGCGCCCAuUCGGcAAGCGU-CUUCGc -3' miRNA: 3'- cUUGCGGGU-AGCUcUUCGCGcGAAGC- -5' |
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8224 | 3' | -54.5 | NC_001978.2 | + | 32435 | 0.68 | 0.577756 |
Target: 5'- -uGCGCCCuuccaugcGUCGAGccGuucggcggacgcuucAGCGCGCUUCu -3' miRNA: 3'- cuUGCGGG--------UAGCUC--U---------------UCGCGCGAAGc -5' |
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8224 | 3' | -54.5 | NC_001978.2 | + | 36349 | 0.67 | 0.584478 |
Target: 5'- cGACGCCCuUCGuc-AGCGCGCacagCGa -3' miRNA: 3'- cUUGCGGGuAGCucuUCGCGCGaa--GC- -5' |
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8224 | 3' | -54.5 | NC_001978.2 | + | 4905 | 0.67 | 0.595713 |
Target: 5'- uGAGCGCCaacuuuGAGGCGCGCgagCGu -3' miRNA: 3'- -CUUGCGGguagcuCUUCGCGCGaa-GC- -5' |
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8224 | 3' | -54.5 | NC_001978.2 | + | 24288 | 0.67 | 0.629575 |
Target: 5'- -cACGCCC--CGGGcgGAGCaauGCGCUUCGu -3' miRNA: 3'- cuUGCGGGuaGCUC--UUCG---CGCGAAGC- -5' |
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8224 | 3' | -54.5 | NC_001978.2 | + | 18968 | 0.66 | 0.640881 |
Target: 5'- aAGC-CCCGgucaCGaAGAGcGCGCGCUUCGu -3' miRNA: 3'- cUUGcGGGUa---GC-UCUU-CGCGCGAAGC- -5' |
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8224 | 3' | -54.5 | NC_001978.2 | + | 2635 | 0.66 | 0.640881 |
Target: 5'- aGACGCCC---GGGgcGCGCGCaUCa -3' miRNA: 3'- cUUGCGGGuagCUCuuCGCGCGaAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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