miRNA display CGI


Results 61 - 80 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8224 5' -58.6 NC_001978.2 + 20242 0.69 0.324977
Target:  5'- aGGCcgugaagGAAGCCGCCGaaGCCGcUGAgGGCa -3'
miRNA:   3'- -CCG-------CUUCGGCGGC--UGGCuGCUgCUGc -5'
8224 5' -58.6 NC_001978.2 + 28447 0.69 0.325753
Target:  5'- gGGCG-AGaCGCUGACCcagcgGACGgACGGCGg -3'
miRNA:   3'- -CCGCuUCgGCGGCUGG-----CUGC-UGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 32247 0.69 0.325753
Target:  5'- cGCGAAGCgcucaaCGUCGACCGggucACGACGcccaGCGg -3'
miRNA:   3'- cCGCUUCG------GCGGCUGGC----UGCUGC----UGC- -5'
8224 5' -58.6 NC_001978.2 + 9216 0.69 0.333589
Target:  5'- cGGcCGGAGCga-CGGCCGACGACaauGGCGa -3'
miRNA:   3'- -CC-GCUUCGgcgGCUGGCUGCUG---CUGC- -5'
8224 5' -58.6 NC_001978.2 + 22442 0.69 0.341562
Target:  5'- cGGCGcuGCCGUucugcacgUGACUGACGA-GACGu -3'
miRNA:   3'- -CCGCuuCGGCG--------GCUGGCUGCUgCUGC- -5'
8224 5' -58.6 NC_001978.2 + 13084 0.69 0.349673
Target:  5'- cGGCGAGacgcugaacGCUGCCGGu--ACGGCGACGg -3'
miRNA:   3'- -CCGCUU---------CGGCGGCUggcUGCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 1559 0.69 0.357089
Target:  5'- cGCGAucauGCUuuaccaccugauaGCCGACCGG-GGCGACGc -3'
miRNA:   3'- cCGCUu---CGG-------------CGGCUGGCUgCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 32471 0.69 0.357919
Target:  5'- -aCGguGCCGaCuCGACCGACuGACGACc -3'
miRNA:   3'- ccGCuuCGGC-G-GCUGGCUG-CUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 7200 0.69 0.366301
Target:  5'- cGcCGGAGCCGguUCGcuuCUGACGGCGGCGu -3'
miRNA:   3'- cC-GCUUCGGC--GGCu--GGCUGCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 35825 0.7 0.295783
Target:  5'- cGGCgGGAGUgGUCGAgCugGGCGACGGCGu -3'
miRNA:   3'- -CCG-CUUCGgCGGCUgG--CUGCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 36108 0.7 0.318054
Target:  5'- cGCGAGGaaGCCGaaGCCGACGACc--- -3'
miRNA:   3'- cCGCUUCggCGGC--UGGCUGCUGcugc -5'
8224 5' -58.6 NC_001978.2 + 41408 0.7 0.318054
Target:  5'- gGGCGggGCgGCU--CCGAaguUGGCGGCGu -3'
miRNA:   3'- -CCGCuuCGgCGGcuGGCU---GCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 13475 0.7 0.310493
Target:  5'- -uCGGAGCUuGCCGAagaUGACGGCGGCu -3'
miRNA:   3'- ccGCUUCGG-CGGCUg--GCUGCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 3615 0.7 0.30307
Target:  5'- uGGCGu-GCCGCUaacuCCGGCGuCGACa -3'
miRNA:   3'- -CCGCuuCGGCGGcu--GGCUGCuGCUGc -5'
8224 5' -58.6 NC_001978.2 + 36709 0.7 0.302335
Target:  5'- cGGCGGAGCCugagcCCGucacggaGCCGGaGACGGCGc -3'
miRNA:   3'- -CCGCUUCGGc----GGC-------UGGCUgCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 13207 0.7 0.281622
Target:  5'- gGGCGGcuuGCUGUgGACC-ACGACGGCc -3'
miRNA:   3'- -CCGCUu--CGGCGgCUGGcUGCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 4769 0.71 0.277479
Target:  5'- cGGUGAGuucgcGCCGCCGAcugaagagcgcgauuCCcagccgGACGGCGACGu -3'
miRNA:   3'- -CCGCUU-----CGGCGGCU---------------GG------CUGCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 30289 0.71 0.268003
Target:  5'- -uCGAAGCCGCCGAg-GGCGACGuguACGa -3'
miRNA:   3'- ccGCUUCGGCGGCUggCUGCUGC---UGC- -5'
8224 5' -58.6 NC_001978.2 + 11526 0.71 0.261395
Target:  5'- cGCGAcGUCGCCuuacAUCGugGGCGACGc -3'
miRNA:   3'- cCGCUuCGGCGGc---UGGCugCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 20581 0.71 0.261395
Target:  5'- cGGCGAccGGuCUGcCCGACCuGACGGCGgaGCGc -3'
miRNA:   3'- -CCGCU--UC-GGC-GGCUGG-CUGCUGC--UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.