miRNA display CGI


Results 61 - 80 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8224 5' -58.6 NC_001978.2 + 27972 0.68 0.39847
Target:  5'- aGGCGAcGCUGaUUGACCcgcgucagccccagGACGGCGGCa -3'
miRNA:   3'- -CCGCUuCGGC-GGCUGG--------------CUGCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 34263 0.68 0.409286
Target:  5'- cGGCGGAGCuUGCCGgagccacGCUGuacACGACGcGCGa -3'
miRNA:   3'- -CCGCUUCG-GCGGC-------UGGC---UGCUGC-UGC- -5'
8224 5' -58.6 NC_001978.2 + 25405 0.68 0.410195
Target:  5'- cGcCGAcuacGCCGCCGACCGGuuCGGgcuCGACGu -3'
miRNA:   3'- cC-GCUu---CGGCGGCUGGCU--GCU---GCUGC- -5'
8224 5' -58.6 NC_001978.2 + 9211 0.68 0.410195
Target:  5'- cGGCGAcggauucGCCGuaaCCGGCCGAauacacuucacCGGCGGCu -3'
miRNA:   3'- -CCGCUu------CGGC---GGCUGGCU-----------GCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 19370 0.68 0.410195
Target:  5'- cGGgGAAGCCaugaaGCCGuCgGGCGugGuCGa -3'
miRNA:   3'- -CCgCUUCGG-----CGGCuGgCUGCugCuGC- -5'
8224 5' -58.6 NC_001978.2 + 33825 0.68 0.410195
Target:  5'- cGCGGaacgccuucacGGUCGagCGAcCCGACGACGGCa -3'
miRNA:   3'- cCGCU-----------UCGGCg-GCU-GGCUGCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 17473 0.68 0.416596
Target:  5'- cGUGuuGCCGCCGACCGuguacgcauagucaGCGuCGuACGc -3'
miRNA:   3'- cCGCuuCGGCGGCUGGC--------------UGCuGC-UGC- -5'
8224 5' -58.6 NC_001978.2 + 3971 0.68 0.419359
Target:  5'- -cUGAAGCgGUCGGCCGucuCGGCGAa- -3'
miRNA:   3'- ccGCUUCGgCGGCUGGCu--GCUGCUgc -5'
8224 5' -58.6 NC_001978.2 + 1679 0.68 0.419359
Target:  5'- cGCGAGcccgaagcuuGCCGCCguGugCGACGuucagcGCGACGu -3'
miRNA:   3'- cCGCUU----------CGGCGG--CugGCUGC------UGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 4075 0.68 0.419359
Target:  5'- gGGCGAGaaguaccggguGCCGCUGaACCugGGCGAaguCGGCGa -3'
miRNA:   3'- -CCGCUU-----------CGGCGGC-UGG--CUGCU---GCUGC- -5'
8224 5' -58.6 NC_001978.2 + 26526 0.67 0.428645
Target:  5'- uGUGucGCUGCCGAUCGAguACGACc -3'
miRNA:   3'- cCGCuuCGGCGGCUGGCUgcUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 30758 0.67 0.432394
Target:  5'- aGGgGAAGuuGCCGA-CGACcuucgugacguucguGACGACc -3'
miRNA:   3'- -CCgCUUCggCGGCUgGCUG---------------CUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 25797 0.67 0.438052
Target:  5'- cGGCGucauaGCCGACCGAU-ACGGCa -3'
miRNA:   3'- -CCGCuucggCGGCUGGCUGcUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 12421 0.67 0.447576
Target:  5'- uGGCGAuuGCCGCCGcguuguccgGCCGuguCGGgaccguCGGCGa -3'
miRNA:   3'- -CCGCUu-CGGCGGC---------UGGCu--GCU------GCUGC- -5'
8224 5' -58.6 NC_001978.2 + 21239 0.67 0.447576
Target:  5'- cGCGcuGCCGCCGACgCGuuCGACcuuGACc -3'
miRNA:   3'- cCGCuuCGGCGGCUG-GCu-GCUG---CUGc -5'
8224 5' -58.6 NC_001978.2 + 24655 0.67 0.447576
Target:  5'- gGGC-AAGCaCGCCGacacauauGCCGACcAUGACGc -3'
miRNA:   3'- -CCGcUUCG-GCGGC--------UGGCUGcUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 33047 0.67 0.451418
Target:  5'- cGCGAAGCCGcCCGugCGcuacugcccaacgccGCGccgguCGACa -3'
miRNA:   3'- cCGCUUCGGC-GGCugGC---------------UGCu----GCUGc -5'
8224 5' -58.6 NC_001978.2 + 12489 0.67 0.457214
Target:  5'- gGGCGGcaguGCUGCCGucuCCGuCGGCGuuccCGg -3'
miRNA:   3'- -CCGCUu---CGGCGGCu--GGCuGCUGCu---GC- -5'
8224 5' -58.6 NC_001978.2 + 38654 0.67 0.457214
Target:  5'- gGGCGcu-CCGCCGucCCGAaCGcCGACGu -3'
miRNA:   3'- -CCGCuucGGCGGCu-GGCU-GCuGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 20386 0.67 0.457214
Target:  5'- cGGCGAaggccgaagucgAGUCGCgccgguCGGCCGACGuCGcCGa -3'
miRNA:   3'- -CCGCU------------UCGGCG------GCUGGCUGCuGCuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.