miRNA display CGI


Results 81 - 100 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8224 5' -58.6 NC_001978.2 + 11526 0.71 0.261395
Target:  5'- cGCGAcGUCGCCuuacAUCGugGGCGACGc -3'
miRNA:   3'- cCGCUuCGGCGGc---UGGCugCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 5844 0.71 0.261395
Target:  5'- cGGCaAGGUCGUugaGACgGACGACGGCa -3'
miRNA:   3'- -CCGcUUCGGCGg--CUGgCUGCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 30020 0.71 0.248579
Target:  5'- cGGCaAGGUCGUCGGCgGACugGGCGGCGc -3'
miRNA:   3'- -CCGcUUCGGCGGCUGgCUG--CUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 28995 0.71 0.246702
Target:  5'- gGGCGGAGUCGCCacgauugcccgacaGACCGGa-GCGACc -3'
miRNA:   3'- -CCGCUUCGGCGG--------------CUGGCUgcUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 31071 0.72 0.242368
Target:  5'- -uCGAAGCCGCUG-CCGcugaGCGACuGACGa -3'
miRNA:   3'- ccGCUUCGGCGGCuGGC----UGCUG-CUGC- -5'
8224 5' -58.6 NC_001978.2 + 15699 0.72 0.242368
Target:  5'- aGCGAAGCCGCCGgaACCGuCGAgcCGuuGa -3'
miRNA:   3'- cCGCUUCGGCGGC--UGGCuGCU--GCugC- -5'
8224 5' -58.6 NC_001978.2 + 15647 0.72 0.236286
Target:  5'- cGGCGGcuUCGCUGGggcUCGACGGCGACa -3'
miRNA:   3'- -CCGCUucGGCGGCU---GGCUGCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 3381 0.72 0.230333
Target:  5'- cGGCGAAGaCCGUCGACC-AUGACcAUGu -3'
miRNA:   3'- -CCGCUUC-GGCGGCUGGcUGCUGcUGC- -5'
8224 5' -58.6 NC_001978.2 + 33915 0.72 0.230333
Target:  5'- uGGCGGAGCaucgggggaGgCGACCGGCGAagagaucaCGGCGc -3'
miRNA:   3'- -CCGCUUCGg--------CgGCUGGCUGCU--------GCUGC- -5'
8224 5' -58.6 NC_001978.2 + 32630 0.72 0.228572
Target:  5'- cGGCGcuGCCuacaaccgggaccgGCCGACUGACGcUGACGc -3'
miRNA:   3'- -CCGCuuCGG--------------CGGCUGGCUGCuGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 35984 0.72 0.227988
Target:  5'- gGGCGAcaccccggagacuGCCGCCGACCcgGGCGuuguguGCGACa -3'
miRNA:   3'- -CCGCUu------------CGGCGGCUGG--CUGC------UGCUGc -5'
8224 5' -58.6 NC_001978.2 + 8299 0.72 0.223357
Target:  5'- cGGCGGcauacggcacgcgAGCCGCUGAgccugccUUGAUGACGGCGc -3'
miRNA:   3'- -CCGCU-------------UCGGCGGCU-------GGCUGCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 26400 0.73 0.207777
Target:  5'- uGGUGAAGCCGCgCGAcuCCGGCaGGCaaccGGCGa -3'
miRNA:   3'- -CCGCUUCGGCG-GCU--GGCUG-CUG----CUGC- -5'
8224 5' -58.6 NC_001978.2 + 38148 0.73 0.202444
Target:  5'- gGGCGAGccagucauacGCCGCCGACCG-CGAaCGcCa -3'
miRNA:   3'- -CCGCUU----------CGGCGGCUGGCuGCU-GCuGc -5'
8224 5' -58.6 NC_001978.2 + 33853 0.73 0.197231
Target:  5'- cGGCGuuacccggguGCCGaCCGugcgcguguacGCCGACGACGACc -3'
miRNA:   3'- -CCGCuu--------CGGC-GGC-----------UGGCUGCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 20956 0.73 0.190629
Target:  5'- aGGCGccacgaaggaacugGAGaCGCUGACgGACGGCGACa -3'
miRNA:   3'- -CCGC--------------UUCgGCGGCUGgCUGCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 38143 0.73 0.182288
Target:  5'- gGGCG-AGCCGCUGAcgucCCGAaGGCGugGc -3'
miRNA:   3'- -CCGCuUCGGCGGCU----GGCUgCUGCugC- -5'
8224 5' -58.6 NC_001978.2 + 38016 0.74 0.168356
Target:  5'- gGGCGAuuacuGCgCGCUGcCCcagGACGACGACGg -3'
miRNA:   3'- -CCGCUu----CG-GCGGCuGG---CUGCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 36967 0.74 0.155386
Target:  5'- cGGUGGcaGGgUGCCGACCGGCaGCGGCa -3'
miRNA:   3'- -CCGCU--UCgGCGGCUGGCUGcUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 37742 0.75 0.139501
Target:  5'- gGGCuauuGCgCGCUGcCCGACGACGGCGa -3'
miRNA:   3'- -CCGcuu-CG-GCGGCuGGCUGCUGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.