miRNA display CGI


Results 61 - 80 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8224 5' -58.6 NC_001978.2 + 26400 0.73 0.207777
Target:  5'- uGGUGAAGCCGCgCGAcuCCGGCaGGCaaccGGCGa -3'
miRNA:   3'- -CCGCUUCGGCG-GCU--GGCUG-CUG----CUGC- -5'
8224 5' -58.6 NC_001978.2 + 26526 0.67 0.428645
Target:  5'- uGUGucGCUGCCGAUCGAguACGACc -3'
miRNA:   3'- cCGCuuCGGCGGCUGGCUgcUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 26600 0.66 0.537911
Target:  5'- gGGCGuucgGGUCGUacuCGAUCGGCaGCGACa -3'
miRNA:   3'- -CCGCu---UCGGCG---GCUGGCUGcUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 27821 0.66 0.52752
Target:  5'- gGGCGGAcGCuuCGCCGaaGCCGcCGACuACGu -3'
miRNA:   3'- -CCGCUU-CG--GCGGC--UGGCuGCUGcUGC- -5'
8224 5' -58.6 NC_001978.2 + 27972 0.68 0.39847
Target:  5'- aGGCGAcGCUGaUUGACCcgcgucagccccagGACGGCGGCa -3'
miRNA:   3'- -CCGCUuCGGC-GGCUGG--------------CUGCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 28447 0.69 0.325753
Target:  5'- gGGCG-AGaCGCUGACCcagcgGACGgACGGCGg -3'
miRNA:   3'- -CCGCuUCgGCGGCUGG-----CUGC-UGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 28588 0.66 0.52752
Target:  5'- aGCGAAGCgCGCgGGCaaGugGguaACGACGu -3'
miRNA:   3'- cCGCUUCG-GCGgCUGg-CugC---UGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 28804 0.66 0.52752
Target:  5'- cGGCGAAuCauCCaauCCGACGACGGCa -3'
miRNA:   3'- -CCGCUUcGgcGGcu-GGCUGCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 28995 0.71 0.246702
Target:  5'- gGGCGGAGUCGCCacgauugcccgacaGACCGGa-GCGACc -3'
miRNA:   3'- -CCGCUUCGGCGG--------------CUGGCUgcUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 29158 0.66 0.52752
Target:  5'- cGGCGccuGCCGCuCGACCGGaacCGuACGu -3'
miRNA:   3'- -CCGCuu-CGGCG-GCUGGCUgcuGC-UGC- -5'
8224 5' -58.6 NC_001978.2 + 29275 0.67 0.465983
Target:  5'- aGGaCGucacgcGCUGCCGACUGAcacugauaguucaCGACGGCa -3'
miRNA:   3'- -CC-GCuu----CGGCGGCUGGCU-------------GCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 29904 0.69 0.357919
Target:  5'- -cCGggGUCaCUGACCGuGCGACGGCa -3'
miRNA:   3'- ccGCuuCGGcGGCUGGC-UGCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 30020 0.71 0.248579
Target:  5'- cGGCaAGGUCGUCGGCgGACugGGCGGCGc -3'
miRNA:   3'- -CCGcUUCGGCGGCUGgCUG--CUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 30289 0.71 0.268003
Target:  5'- -uCGAAGCCGCCGAg-GGCGACGuguACGa -3'
miRNA:   3'- ccGCUUCGGCGGCUggCUGCUGC---UGC- -5'
8224 5' -58.6 NC_001978.2 + 30374 0.66 0.537911
Target:  5'- cGcCGAAGCCGcCCGGCUcGCGugG-Ca -3'
miRNA:   3'- cC-GCUUCGGC-GGCUGGcUGCugCuGc -5'
8224 5' -58.6 NC_001978.2 + 30758 0.67 0.432394
Target:  5'- aGGgGAAGuuGCCGA-CGACcuucgugacguucguGACGACc -3'
miRNA:   3'- -CCgCUUCggCGGCUgGCUG---------------CUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 31071 0.72 0.242368
Target:  5'- -uCGAAGCCGCUG-CCGcugaGCGACuGACGa -3'
miRNA:   3'- ccGCUUCGGCGGCuGGC----UGCUG-CUGC- -5'
8224 5' -58.6 NC_001978.2 + 31261 0.67 0.465983
Target:  5'- cGGCGccaacgucGAGUUcgucacgGCCaacGCCGACGGCGACGu -3'
miRNA:   3'- -CCGC--------UUCGG-------CGGc--UGGCUGCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 31336 0.66 0.517205
Target:  5'- cGGCGuuGGCCGUgaCGAacUCGACGuuGGCGc -3'
miRNA:   3'- -CCGCu-UCGGCG--GCU--GGCUGCugCUGC- -5'
8224 5' -58.6 NC_001978.2 + 32017 0.68 0.383466
Target:  5'- aGGCGGAGCUucagGCUGAgCGGgGGCG-CGu -3'
miRNA:   3'- -CCGCUUCGG----CGGCUgGCUgCUGCuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.