miRNA display CGI


Results 101 - 111 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8224 5' -58.6 NC_001978.2 + 37742 0.75 0.139501
Target:  5'- gGGCuauuGCgCGCUGcCCGACGACGGCGa -3'
miRNA:   3'- -CCGcuu-CG-GCGGCuGGCUGCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 37868 0.66 0.506973
Target:  5'- cGGCGggGgCGCCGucCCGuACaACGuCGc -3'
miRNA:   3'- -CCGCuuCgGCGGCu-GGC-UGcUGCuGC- -5'
8224 5' -58.6 NC_001978.2 + 38016 0.74 0.168356
Target:  5'- gGGCGAuuacuGCgCGCUGcCCcagGACGACGACGg -3'
miRNA:   3'- -CCGCUu----CG-GCGGCuGG---CUGCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 38143 0.73 0.182288
Target:  5'- gGGCG-AGCCGCUGAcgucCCGAaGGCGugGc -3'
miRNA:   3'- -CCGCuUCGGCGGCU----GGCUgCUGCugC- -5'
8224 5' -58.6 NC_001978.2 + 38148 0.73 0.202444
Target:  5'- gGGCGAGccagucauacGCCGCCGACCG-CGAaCGcCa -3'
miRNA:   3'- -CCGCUU----------CGGCGGCUGGCuGCU-GCuGc -5'
8224 5' -58.6 NC_001978.2 + 38571 0.66 0.506973
Target:  5'- aGCGAAG-CGCCGGgcacgUCGGCguucggGACGGCGg -3'
miRNA:   3'- cCGCUUCgGCGGCU-----GGCUG------CUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 38654 0.67 0.457214
Target:  5'- gGGCGcu-CCGCCGucCCGAaCGcCGACGu -3'
miRNA:   3'- -CCGCuucGGCGGCu-GGCU-GCuGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 39638 0.66 0.506973
Target:  5'- uGCGGacgGGUCGaCCaccuuCCGGCGACGGCa -3'
miRNA:   3'- cCGCU---UCGGC-GGcu---GGCUGCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 39831 0.66 0.506973
Target:  5'- -aCGAAGaCCGCgCGGCaGGCGcguACGACGg -3'
miRNA:   3'- ccGCUUC-GGCG-GCUGgCUGC---UGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 40157 1.11 0.000344
Target:  5'- gGGCGAAGCCGCCGACCGACGACGACGa -3'
miRNA:   3'- -CCGCUUCGGCGGCUGGCUGCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 41408 0.7 0.318054
Target:  5'- gGGCGggGCgGCU--CCGAaguUGGCGGCGu -3'
miRNA:   3'- -CCGCuuCGgCGGcuGGCU---GCUGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.