miRNA display CGI


Results 41 - 60 of 111 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8224 5' -58.6 NC_001978.2 + 29275 0.67 0.465983
Target:  5'- aGGaCGucacgcGCUGCCGACUGAcacugauaguucaCGACGGCa -3'
miRNA:   3'- -CC-GCuu----CGGCGGCUGGCU-------------GCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 29158 0.66 0.52752
Target:  5'- cGGCGccuGCCGCuCGACCGGaacCGuACGu -3'
miRNA:   3'- -CCGCuu-CGGCG-GCUGGCUgcuGC-UGC- -5'
8224 5' -58.6 NC_001978.2 + 28995 0.71 0.246702
Target:  5'- gGGCGGAGUCGCCacgauugcccgacaGACCGGa-GCGACc -3'
miRNA:   3'- -CCGCUUCGGCGG--------------CUGGCUgcUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 28804 0.66 0.52752
Target:  5'- cGGCGAAuCauCCaauCCGACGACGGCa -3'
miRNA:   3'- -CCGCUUcGgcGGcu-GGCUGCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 28588 0.66 0.52752
Target:  5'- aGCGAAGCgCGCgGGCaaGugGguaACGACGu -3'
miRNA:   3'- cCGCUUCG-GCGgCUGg-CugC---UGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 28447 0.69 0.325753
Target:  5'- gGGCG-AGaCGCUGACCcagcgGACGgACGGCGg -3'
miRNA:   3'- -CCGCuUCgGCGGCUGG-----CUGC-UGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 27972 0.68 0.39847
Target:  5'- aGGCGAcGCUGaUUGACCcgcgucagccccagGACGGCGGCa -3'
miRNA:   3'- -CCGCUuCGGC-GGCUGG--------------CUGCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 27821 0.66 0.52752
Target:  5'- gGGCGGAcGCuuCGCCGaaGCCGcCGACuACGu -3'
miRNA:   3'- -CCGCUU-CG--GCGGC--UGGCuGCUGcUGC- -5'
8224 5' -58.6 NC_001978.2 + 26600 0.66 0.537911
Target:  5'- gGGCGuucgGGUCGUacuCGAUCGGCaGCGACa -3'
miRNA:   3'- -CCGCu---UCGGCG---GCUGGCUGcUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 26526 0.67 0.428645
Target:  5'- uGUGucGCUGCCGAUCGAguACGACc -3'
miRNA:   3'- cCGCuuCGGCGGCUGGCUgcUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 26400 0.73 0.207777
Target:  5'- uGGUGAAGCCGCgCGAcuCCGGCaGGCaaccGGCGa -3'
miRNA:   3'- -CCGCUUCGGCG-GCU--GGCUG-CUG----CUGC- -5'
8224 5' -58.6 NC_001978.2 + 25919 0.66 0.506973
Target:  5'- cGUGAAGCCGacuCCGGCCGuguCGuugucaccacacACGAUGa -3'
miRNA:   3'- cCGCUUCGGC---GGCUGGCu--GC------------UGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 25797 0.67 0.438052
Target:  5'- cGGCGucauaGCCGACCGAU-ACGGCa -3'
miRNA:   3'- -CCGCuucggCGGCUGGCUGcUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 25486 0.71 0.268003
Target:  5'- gGGCGAcGUCGagcCCGaACCGGuCGGCGGCGu -3'
miRNA:   3'- -CCGCUuCGGC---GGC-UGGCU-GCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 25405 0.68 0.410195
Target:  5'- cGcCGAcuacGCCGCCGACCGGuuCGGgcuCGACGu -3'
miRNA:   3'- cC-GCUu---CGGCGGCUGGCU--GCU---GCUGC- -5'
8224 5' -58.6 NC_001978.2 + 25004 0.66 0.486773
Target:  5'- cGGUccGAAGcCCGCCGACUGAgcCGGguugcCGACu -3'
miRNA:   3'- -CCG--CUUC-GGCGGCUGGCU--GCU-----GCUGc -5'
8224 5' -58.6 NC_001978.2 + 24655 0.67 0.447576
Target:  5'- gGGC-AAGCaCGCCGacacauauGCCGACcAUGACGc -3'
miRNA:   3'- -CCGcUUCG-GCGGC--------UGGCUGcUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 22442 0.69 0.341562
Target:  5'- cGGCGcuGCCGUucugcacgUGACUGACGA-GACGu -3'
miRNA:   3'- -CCGCuuCGGCG--------GCUGGCUGCUgCUGC- -5'
8224 5' -58.6 NC_001978.2 + 22356 0.66 0.486773
Target:  5'- aGGUGAGGCUuCCcgGACCGGucCGGCGuCGg -3'
miRNA:   3'- -CCGCUUCGGcGG--CUGGCU--GCUGCuGC- -5'
8224 5' -58.6 NC_001978.2 + 21239 0.67 0.447576
Target:  5'- cGCGcuGCCGCCGACgCGuuCGACcuuGACc -3'
miRNA:   3'- cCGCuuCGGCGGCUG-GCu-GCUG---CUGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.