miRNA display CGI


Results 61 - 80 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8224 5' -58.6 NC_001978.2 + 20956 0.73 0.190629
Target:  5'- aGGCGccacgaaggaacugGAGaCGCUGACgGACGGCGACa -3'
miRNA:   3'- -CCGC--------------UUCgGCGGCUGgCUGCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 20816 0.66 0.496826
Target:  5'- cGGUGAcaAGCuCGaCgGACUGAagGACGACGc -3'
miRNA:   3'- -CCGCU--UCG-GC-GgCUGGCUg-CUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 20653 0.82 0.0456
Target:  5'- aGGCGAAGaaGCgGauuGCCGACGACGACGu -3'
miRNA:   3'- -CCGCUUCggCGgC---UGGCUGCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 20581 0.71 0.261395
Target:  5'- cGGCGAccGGuCUGcCCGACCuGACGGCGgaGCGc -3'
miRNA:   3'- -CCGCU--UC-GGC-GGCUGG-CUGCUGC--UGC- -5'
8224 5' -58.6 NC_001978.2 + 20471 0.8 0.062343
Target:  5'- cGGCGAcGUCgGCCGACCGGCG-CGACu -3'
miRNA:   3'- -CCGCUuCGG-CGGCUGGCUGCuGCUGc -5'
8224 5' -58.6 NC_001978.2 + 20386 0.67 0.457214
Target:  5'- cGGCGAaggccgaagucgAGUCGCgccgguCGGCCGACGuCGcCGa -3'
miRNA:   3'- -CCGCU------------UCGGCG------GCUGGCUGCuGCuGC- -5'
8224 5' -58.6 NC_001978.2 + 20242 0.69 0.324977
Target:  5'- aGGCcgugaagGAAGCCGCCGaaGCCGcUGAgGGCa -3'
miRNA:   3'- -CCG-------CUUCGGCGGC--UGGCuGCUgCUGc -5'
8224 5' -58.6 NC_001978.2 + 19613 0.69 0.325753
Target:  5'- uGGUGAccgaCGCCGACauucagGACGGCGACa -3'
miRNA:   3'- -CCGCUucg-GCGGCUGg-----CUGCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 19370 0.68 0.410195
Target:  5'- cGGgGAAGCCaugaaGCCGuCgGGCGugGuCGa -3'
miRNA:   3'- -CCgCUUCGG-----CGGCuGgCUGCugCuGC- -5'
8224 5' -58.6 NC_001978.2 + 18440 0.75 0.135769
Target:  5'- cGGCcguAGCgaCGCCGACaagggCGACGACGACGg -3'
miRNA:   3'- -CCGcu-UCG--GCGGCUG-----GCUGCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 17567 0.66 0.517205
Target:  5'- cGGUuacAAGCacaaGgCGACCGGCGACGuugGCGa -3'
miRNA:   3'- -CCGc--UUCGg---CgGCUGGCUGCUGC---UGC- -5'
8224 5' -58.6 NC_001978.2 + 17473 0.68 0.416596
Target:  5'- cGUGuuGCCGCCGACCGuguacgcauagucaGCGuCGuACGc -3'
miRNA:   3'- cCGCuuCGGCGGCUGGC--------------UGCuGC-UGC- -5'
8224 5' -58.6 NC_001978.2 + 17310 0.68 0.383466
Target:  5'- gGGCGuuGGUCGgCGuauCCGGCGGuCGGCGc -3'
miRNA:   3'- -CCGCu-UCGGCgGCu--GGCUGCU-GCUGC- -5'
8224 5' -58.6 NC_001978.2 + 15699 0.72 0.242368
Target:  5'- aGCGAAGCCGCCGgaACCGuCGAgcCGuuGa -3'
miRNA:   3'- cCGCUUCGGCGGC--UGGCuGCU--GCugC- -5'
8224 5' -58.6 NC_001978.2 + 15647 0.72 0.236286
Target:  5'- cGGCGGcuUCGCUGGggcUCGACGGCGACa -3'
miRNA:   3'- -CCGCUucGGCGGCU---GGCUGCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 13815 0.66 0.537911
Target:  5'- cGGcCGGAGCCGCac-CCGugGccauucCGACGc -3'
miRNA:   3'- -CC-GCUUCGGCGgcuGGCugCu-----GCUGC- -5'
8224 5' -58.6 NC_001978.2 + 13475 0.7 0.310493
Target:  5'- -uCGGAGCUuGCCGAagaUGACGGCGGCu -3'
miRNA:   3'- ccGCUUCGG-CGGCUg--GCUGCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 13207 0.7 0.281622
Target:  5'- gGGCGGcuuGCUGUgGACC-ACGACGGCc -3'
miRNA:   3'- -CCGCUu--CGGCGgCUGGcUGCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 13084 0.69 0.349673
Target:  5'- cGGCGAGacgcugaacGCUGCCGGu--ACGGCGACGg -3'
miRNA:   3'- -CCGCUU---------CGGCGGCUggcUGCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 12765 0.76 0.125118
Target:  5'- uGGCGAcGCUGCCGACCGGCauuACG-CGc -3'
miRNA:   3'- -CCGCUuCGGCGGCUGGCUGc--UGCuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.