miRNA display CGI


Results 81 - 100 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8224 5' -58.6 NC_001978.2 + 12575 0.76 0.115245
Target:  5'- cGUGAAGCCGaCCGggaacGCCGACGA-GACGg -3'
miRNA:   3'- cCGCUUCGGC-GGC-----UGGCUGCUgCUGC- -5'
8224 5' -58.6 NC_001978.2 + 12489 0.67 0.457214
Target:  5'- gGGCGGcaguGCUGCCGucuCCGuCGGCGuuccCGg -3'
miRNA:   3'- -CCGCUu---CGGCGGCu--GGCuGCUGCu---GC- -5'
8224 5' -58.6 NC_001978.2 + 12421 0.67 0.447576
Target:  5'- uGGCGAuuGCCGCCGcguuguccgGCCGuguCGGgaccguCGGCGa -3'
miRNA:   3'- -CCGCUu-CGGCGGC---------UGGCu--GCU------GCUGC- -5'
8224 5' -58.6 NC_001978.2 + 12335 0.67 0.476817
Target:  5'- -uUGAAGCCGuCCGcuGCCGACGuCGuCa -3'
miRNA:   3'- ccGCUUCGGC-GGC--UGGCUGCuGCuGc -5'
8224 5' -58.6 NC_001978.2 + 11526 0.71 0.261395
Target:  5'- cGCGAcGUCGCCuuacAUCGugGGCGACGc -3'
miRNA:   3'- cCGCUuCGGCGGc---UGGCugCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 11028 0.66 0.52752
Target:  5'- cGCGAAGUCGCCugggcgcuGCgGACGucucCGGCGu -3'
miRNA:   3'- cCGCUUCGGCGGc-------UGgCUGCu---GCUGC- -5'
8224 5' -58.6 NC_001978.2 + 10051 0.76 0.128579
Target:  5'- -aCGAAGCCGCCGACCGuCGccauaguCGACc -3'
miRNA:   3'- ccGCUUCGGCGGCUGGCuGCu------GCUGc -5'
8224 5' -58.6 NC_001978.2 + 9831 0.67 0.476817
Target:  5'- cGGCGAAGUCGgCaGGCgaaaCGAUGcACGACa -3'
miRNA:   3'- -CCGCUUCGGCgG-CUG----GCUGC-UGCUGc -5'
8224 5' -58.6 NC_001978.2 + 9216 0.69 0.333589
Target:  5'- cGGcCGGAGCga-CGGCCGACGACaauGGCGa -3'
miRNA:   3'- -CC-GCUUCGgcgGCUGGCUGCUG---CUGC- -5'
8224 5' -58.6 NC_001978.2 + 9211 0.68 0.410195
Target:  5'- cGGCGAcggauucGCCGuaaCCGGCCGAauacacuucacCGGCGGCu -3'
miRNA:   3'- -CCGCUu------CGGC---GGCUGGCU-----------GCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 9118 0.77 0.105228
Target:  5'- gGGUGAAGCCGCCGgugaaguguauucgGCCGGuuACGGCGa -3'
miRNA:   3'- -CCGCUUCGGCGGC--------------UGGCUgcUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 9081 0.69 0.349673
Target:  5'- aGCGAuaccGgCGCCaauGCCGACGGCGAUa -3'
miRNA:   3'- cCGCUu---CgGCGGc--UGGCUGCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 8808 0.67 0.457214
Target:  5'- -aCGAAGCgCGCCGGUCGGgGGCGaaGCGg -3'
miRNA:   3'- ccGCUUCG-GCGGCUGGCUgCUGC--UGC- -5'
8224 5' -58.6 NC_001978.2 + 8645 0.67 0.466962
Target:  5'- aGGCGAAGCCGgacCCuACCG-CGACcaacGCGu -3'
miRNA:   3'- -CCGCUUCGGC---GGcUGGCuGCUGc---UGC- -5'
8224 5' -58.6 NC_001978.2 + 8299 0.72 0.223357
Target:  5'- cGGCGGcauacggcacgcgAGCCGCUGAgccugccUUGAUGACGGCGc -3'
miRNA:   3'- -CCGCU-------------UCGGCGGCU-------GGCUGCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 7200 0.69 0.366301
Target:  5'- cGcCGGAGCCGguUCGcuuCUGACGGCGGCGu -3'
miRNA:   3'- cC-GCUUCGGC--GGCu--GGCUGCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 6235 0.67 0.476817
Target:  5'- cGCGGAGUCGUCaaGACCGuCGAgCGcGCGa -3'
miRNA:   3'- cCGCUUCGGCGG--CUGGCuGCU-GC-UGC- -5'
8224 5' -58.6 NC_001978.2 + 5844 0.71 0.261395
Target:  5'- cGGCaAGGUCGUugaGACgGACGACGGCa -3'
miRNA:   3'- -CCGcUUCGGCGg--CUGgCUGCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 5378 0.68 0.383466
Target:  5'- gGGCGA--CCGCCGGgauugUCGGCGA-GACGg -3'
miRNA:   3'- -CCGCUucGGCGGCU-----GGCUGCUgCUGC- -5'
8224 5' -58.6 NC_001978.2 + 5132 0.79 0.071792
Target:  5'- aGCGuu-CCGCCGACCacGACGACGACGc -3'
miRNA:   3'- cCGCuucGGCGGCUGG--CUGCUGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.