Results 101 - 111 of 111 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8224 | 5' | -58.6 | NC_001978.2 | + | 4769 | 0.71 | 0.277479 |
Target: 5'- cGGUGAGuucgcGCCGCCGAcugaagagcgcgauuCCcagccgGACGGCGACGu -3' miRNA: 3'- -CCGCUU-----CGGCGGCU---------------GG------CUGCUGCUGC- -5' |
|||||||
8224 | 5' | -58.6 | NC_001978.2 | + | 4613 | 0.67 | 0.466962 |
Target: 5'- cGGUG-GGCagCGaCgGGCgGACGACGACGa -3' miRNA: 3'- -CCGCuUCG--GC-GgCUGgCUGCUGCUGC- -5' |
|||||||
8224 | 5' | -58.6 | NC_001978.2 | + | 4075 | 0.68 | 0.419359 |
Target: 5'- gGGCGAGaaguaccggguGCCGCUGaACCugGGCGAaguCGGCGa -3' miRNA: 3'- -CCGCUU-----------CGGCGGC-UGG--CUGCU---GCUGC- -5' |
|||||||
8224 | 5' | -58.6 | NC_001978.2 | + | 3971 | 0.68 | 0.419359 |
Target: 5'- -cUGAAGCgGUCGGCCGucuCGGCGAa- -3' miRNA: 3'- ccGCUUCGgCGGCUGGCu--GCUGCUgc -5' |
|||||||
8224 | 5' | -58.6 | NC_001978.2 | + | 3615 | 0.7 | 0.30307 |
Target: 5'- uGGCGu-GCCGCUaacuCCGGCGuCGACa -3' miRNA: 3'- -CCGCuuCGGCGGcu--GGCUGCuGCUGc -5' |
|||||||
8224 | 5' | -58.6 | NC_001978.2 | + | 3381 | 0.72 | 0.230333 |
Target: 5'- cGGCGAAGaCCGUCGACC-AUGACcAUGu -3' miRNA: 3'- -CCGCUUC-GGCGGCUGGcUGCUGcUGC- -5' |
|||||||
8224 | 5' | -58.6 | NC_001978.2 | + | 2739 | 0.66 | 0.486773 |
Target: 5'- cGGCaAGGUCGaucuuCCGGCgCGACGACG-CGu -3' miRNA: 3'- -CCGcUUCGGC-----GGCUG-GCUGCUGCuGC- -5' |
|||||||
8224 | 5' | -58.6 | NC_001978.2 | + | 1679 | 0.68 | 0.419359 |
Target: 5'- cGCGAGcccgaagcuuGCCGCCguGugCGACGuucagcGCGACGu -3' miRNA: 3'- cCGCUU----------CGGCGG--CugGCUGC------UGCUGC- -5' |
|||||||
8224 | 5' | -58.6 | NC_001978.2 | + | 1559 | 0.69 | 0.357089 |
Target: 5'- cGCGAucauGCUuuaccaccugauaGCCGACCGG-GGCGACGc -3' miRNA: 3'- cCGCUu---CGG-------------CGGCUGGCUgCUGCUGC- -5' |
|||||||
8224 | 5' | -58.6 | NC_001978.2 | + | 1470 | 0.67 | 0.476817 |
Target: 5'- --aGGAGCCggaacgGCUGACCGGCGaACGAa- -3' miRNA: 3'- ccgCUUCGG------CGGCUGGCUGC-UGCUgc -5' |
|||||||
8224 | 5' | -58.6 | NC_001978.2 | + | 29 | 0.66 | 0.486773 |
Target: 5'- aGGUG-AGCCGCCGgACCcaGGCGccccccaggccaACGACc -3' miRNA: 3'- -CCGCuUCGGCGGC-UGG--CUGC------------UGCUGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home