miRNA display CGI


Results 41 - 60 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8224 5' -58.6 NC_001978.2 + 35079 0.76 0.119759
Target:  5'- gGGCGggGCa-CUGACCGACGaacugauucagucauGCGACGa -3'
miRNA:   3'- -CCGCuuCGgcGGCUGGCUGC---------------UGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 9118 0.77 0.105228
Target:  5'- gGGUGAAGCCGCCGgugaaguguauucgGCCGGuuACGGCGa -3'
miRNA:   3'- -CCGCUUCGGCGGC--------------UGGCUgcUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 36781 0.78 0.087359
Target:  5'- cGcCGGAGCCugaGCCGgagccuGCCGACGACGACGu -3'
miRNA:   3'- cC-GCUUCGG---CGGC------UGGCUGCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 5132 0.79 0.071792
Target:  5'- aGCGuu-CCGCCGACCacGACGACGACGc -3'
miRNA:   3'- cCGCuucGGCGGCUGG--CUGCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 20653 0.82 0.0456
Target:  5'- aGGCGAAGaaGCgGauuGCCGACGACGACGu -3'
miRNA:   3'- -CCGCUUCggCGgC---UGGCUGCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 33915 0.72 0.230333
Target:  5'- uGGCGGAGCaucgggggaGgCGACCGGCGAagagaucaCGGCGc -3'
miRNA:   3'- -CCGCUUCGg--------CgGCUGGCUGCU--------GCUGC- -5'
8224 5' -58.6 NC_001978.2 + 15647 0.72 0.236286
Target:  5'- cGGCGGcuUCGCUGGggcUCGACGGCGACa -3'
miRNA:   3'- -CCGCUucGGCGGCU---GGCUGCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 41408 0.7 0.318054
Target:  5'- gGGCGggGCgGCU--CCGAaguUGGCGGCGu -3'
miRNA:   3'- -CCGCuuCGgCGGcuGGCU---GCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 36108 0.7 0.318054
Target:  5'- cGCGAGGaaGCCGaaGCCGACGACc--- -3'
miRNA:   3'- cCGCUUCggCGGC--UGGCUGCUGcugc -5'
8224 5' -58.6 NC_001978.2 + 13475 0.7 0.310493
Target:  5'- -uCGGAGCUuGCCGAagaUGACGGCGGCu -3'
miRNA:   3'- ccGCUUCGG-CGGCUg--GCUGCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 3615 0.7 0.30307
Target:  5'- uGGCGu-GCCGCUaacuCCGGCGuCGACa -3'
miRNA:   3'- -CCGCuuCGGCGGcu--GGCUGCuGCUGc -5'
8224 5' -58.6 NC_001978.2 + 36709 0.7 0.302335
Target:  5'- cGGCGGAGCCugagcCCGucacggaGCCGGaGACGGCGc -3'
miRNA:   3'- -CCGCUUCGGc----GGC-------UGGCUgCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 13207 0.7 0.281622
Target:  5'- gGGCGGcuuGCUGUgGACC-ACGACGGCc -3'
miRNA:   3'- -CCGCUu--CGGCGgCUGGcUGCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 4769 0.71 0.277479
Target:  5'- cGGUGAGuucgcGCCGCCGAcugaagagcgcgauuCCcagccgGACGGCGACGu -3'
miRNA:   3'- -CCGCUU-----CGGCGGCU---------------GG------CUGCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 30289 0.71 0.268003
Target:  5'- -uCGAAGCCGCCGAg-GGCGACGuguACGa -3'
miRNA:   3'- ccGCUUCGGCGGCUggCUGCUGC---UGC- -5'
8224 5' -58.6 NC_001978.2 + 20581 0.71 0.261395
Target:  5'- cGGCGAccGGuCUGcCCGACCuGACGGCGgaGCGc -3'
miRNA:   3'- -CCGCU--UC-GGC-GGCUGG-CUGCUGC--UGC- -5'
8224 5' -58.6 NC_001978.2 + 11526 0.71 0.261395
Target:  5'- cGCGAcGUCGCCuuacAUCGugGGCGACGc -3'
miRNA:   3'- cCGCUuCGGCGGc---UGGCugCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 5844 0.71 0.261395
Target:  5'- cGGCaAGGUCGUugaGACgGACGACGGCa -3'
miRNA:   3'- -CCGcUUCGGCGg--CUGgCUGCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 28995 0.71 0.246702
Target:  5'- gGGCGGAGUCGCCacgauugcccgacaGACCGGa-GCGACc -3'
miRNA:   3'- -CCGCUUCGGCGG--------------CUGGCUgcUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 31071 0.72 0.242368
Target:  5'- -uCGAAGCCGCUG-CCGcugaGCGACuGACGa -3'
miRNA:   3'- ccGCUUCGGCGGCuGGC----UGCUG-CUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.