Results 61 - 80 of 111 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8224 | 5' | -58.6 | NC_001978.2 | + | 9216 | 0.69 | 0.333589 |
Target: 5'- cGGcCGGAGCga-CGGCCGACGACaauGGCGa -3' miRNA: 3'- -CC-GCUUCGgcgGCUGGCUGCUG---CUGC- -5' |
|||||||
8224 | 5' | -58.6 | NC_001978.2 | + | 32247 | 0.69 | 0.325753 |
Target: 5'- cGCGAAGCgcucaaCGUCGACCGggucACGACGcccaGCGg -3' miRNA: 3'- cCGCUUCG------GCGGCUGGC----UGCUGC----UGC- -5' |
|||||||
8224 | 5' | -58.6 | NC_001978.2 | + | 28447 | 0.69 | 0.325753 |
Target: 5'- gGGCG-AGaCGCUGACCcagcgGACGgACGGCGg -3' miRNA: 3'- -CCGCuUCgGCGGCUGG-----CUGC-UGCUGC- -5' |
|||||||
8224 | 5' | -58.6 | NC_001978.2 | + | 19613 | 0.69 | 0.325753 |
Target: 5'- uGGUGAccgaCGCCGACauucagGACGGCGACa -3' miRNA: 3'- -CCGCUucg-GCGGCUGg-----CUGCUGCUGc -5' |
|||||||
8224 | 5' | -58.6 | NC_001978.2 | + | 20242 | 0.69 | 0.324977 |
Target: 5'- aGGCcgugaagGAAGCCGCCGaaGCCGcUGAgGGCa -3' miRNA: 3'- -CCG-------CUUCGGCGGC--UGGCuGCUgCUGc -5' |
|||||||
8224 | 5' | -58.6 | NC_001978.2 | + | 41408 | 0.7 | 0.318054 |
Target: 5'- gGGCGggGCgGCU--CCGAaguUGGCGGCGu -3' miRNA: 3'- -CCGCuuCGgCGGcuGGCU---GCUGCUGC- -5' |
|||||||
8224 | 5' | -58.6 | NC_001978.2 | + | 36108 | 0.7 | 0.318054 |
Target: 5'- cGCGAGGaaGCCGaaGCCGACGACc--- -3' miRNA: 3'- cCGCUUCggCGGC--UGGCUGCUGcugc -5' |
|||||||
8224 | 5' | -58.6 | NC_001978.2 | + | 20581 | 0.71 | 0.261395 |
Target: 5'- cGGCGAccGGuCUGcCCGACCuGACGGCGgaGCGc -3' miRNA: 3'- -CCGCU--UC-GGC-GGCUGG-CUGCUGC--UGC- -5' |
|||||||
8224 | 5' | -58.6 | NC_001978.2 | + | 30289 | 0.71 | 0.268003 |
Target: 5'- -uCGAAGCCGCCGAg-GGCGACGuguACGa -3' miRNA: 3'- ccGCUUCGGCGGCUggCUGCUGC---UGC- -5' |
|||||||
8224 | 5' | -58.6 | NC_001978.2 | + | 4769 | 0.71 | 0.277479 |
Target: 5'- cGGUGAGuucgcGCCGCCGAcugaagagcgcgauuCCcagccgGACGGCGACGu -3' miRNA: 3'- -CCGCUU-----CGGCGGCU---------------GG------CUGCUGCUGC- -5' |
|||||||
8224 | 5' | -58.6 | NC_001978.2 | + | 13207 | 0.7 | 0.281622 |
Target: 5'- gGGCGGcuuGCUGUgGACC-ACGACGGCc -3' miRNA: 3'- -CCGCUu--CGGCGgCUGGcUGCUGCUGc -5' |
|||||||
8224 | 5' | -58.6 | NC_001978.2 | + | 36709 | 0.7 | 0.302335 |
Target: 5'- cGGCGGAGCCugagcCCGucacggaGCCGGaGACGGCGc -3' miRNA: 3'- -CCGCUUCGGc----GGC-------UGGCUgCUGCUGC- -5' |
|||||||
8224 | 5' | -58.6 | NC_001978.2 | + | 3615 | 0.7 | 0.30307 |
Target: 5'- uGGCGu-GCCGCUaacuCCGGCGuCGACa -3' miRNA: 3'- -CCGCuuCGGCGGcu--GGCUGCuGCUGc -5' |
|||||||
8224 | 5' | -58.6 | NC_001978.2 | + | 13475 | 0.7 | 0.310493 |
Target: 5'- -uCGGAGCUuGCCGAagaUGACGGCGGCu -3' miRNA: 3'- ccGCUUCGG-CGGCUg--GCUGCUGCUGc -5' |
|||||||
8224 | 5' | -58.6 | NC_001978.2 | + | 39638 | 0.66 | 0.506973 |
Target: 5'- uGCGGacgGGUCGaCCaccuuCCGGCGACGGCa -3' miRNA: 3'- cCGCU---UCGGC-GGcu---GGCUGCUGCUGc -5' |
|||||||
8224 | 5' | -58.6 | NC_001978.2 | + | 25919 | 0.66 | 0.506973 |
Target: 5'- cGUGAAGCCGacuCCGGCCGuguCGuugucaccacacACGAUGa -3' miRNA: 3'- cCGCUUCGGC---GGCUGGCu--GC------------UGCUGC- -5' |
|||||||
8224 | 5' | -58.6 | NC_001978.2 | + | 34318 | 0.66 | 0.506973 |
Target: 5'- cGGC-AAGCucCGCCGA-CGGCGcAUGACGu -3' miRNA: 3'- -CCGcUUCG--GCGGCUgGCUGC-UGCUGC- -5' |
|||||||
8224 | 5' | -58.6 | NC_001978.2 | + | 31336 | 0.66 | 0.517205 |
Target: 5'- cGGCGuuGGCCGUgaCGAacUCGACGuuGGCGc -3' miRNA: 3'- -CCGCu-UCGGCG--GCU--GGCUGCugCUGC- -5' |
|||||||
8224 | 5' | -58.6 | NC_001978.2 | + | 28804 | 0.66 | 0.52752 |
Target: 5'- cGGCGAAuCauCCaauCCGACGACGGCa -3' miRNA: 3'- -CCGCUUcGgcGGcu-GGCUGCUGCUGc -5' |
|||||||
8224 | 5' | -58.6 | NC_001978.2 | + | 20471 | 0.8 | 0.062343 |
Target: 5'- cGGCGAcGUCgGCCGACCGGCG-CGACu -3' miRNA: 3'- -CCGCUuCGG-CGGCUGGCUGCuGCUGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home