miRNA display CGI


Results 41 - 60 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8224 5' -58.6 NC_001978.2 + 8645 0.67 0.466962
Target:  5'- aGGCGAAGCCGgacCCuACCG-CGACcaacGCGu -3'
miRNA:   3'- -CCGCUUCGGC---GGcUGGCuGCUGc---UGC- -5'
8224 5' -58.6 NC_001978.2 + 26526 0.67 0.428645
Target:  5'- uGUGucGCUGCCGAUCGAguACGACc -3'
miRNA:   3'- cCGCuuCGGCGGCUGGCUgcUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 31261 0.67 0.465983
Target:  5'- cGGCGccaacgucGAGUUcgucacgGCCaacGCCGACGGCGACGu -3'
miRNA:   3'- -CCGC--------UUCGG-------CGGc--UGGCUGCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 20386 0.67 0.457214
Target:  5'- cGGCGAaggccgaagucgAGUCGCgccgguCGGCCGACGuCGcCGa -3'
miRNA:   3'- -CCGCU------------UCGGCG------GCUGGCUGCuGCuGC- -5'
8224 5' -58.6 NC_001978.2 + 12489 0.67 0.457214
Target:  5'- gGGCGGcaguGCUGCCGucuCCGuCGGCGuuccCGg -3'
miRNA:   3'- -CCGCUu---CGGCGGCu--GGCuGCUGCu---GC- -5'
8224 5' -58.6 NC_001978.2 + 30758 0.67 0.432394
Target:  5'- aGGgGAAGuuGCCGA-CGACcuucgugacguucguGACGACc -3'
miRNA:   3'- -CCgCUUCggCGGCUgGCUG---------------CUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 8808 0.67 0.457214
Target:  5'- -aCGAAGCgCGCCGGUCGGgGGCGaaGCGg -3'
miRNA:   3'- ccGCUUCG-GCGGCUGGCUgCUGC--UGC- -5'
8224 5' -58.6 NC_001978.2 + 21239 0.67 0.447576
Target:  5'- cGCGcuGCCGCCGACgCGuuCGACcuuGACc -3'
miRNA:   3'- cCGCuuCGGCGGCUG-GCu-GCUG---CUGc -5'
8224 5' -58.6 NC_001978.2 + 4075 0.68 0.419359
Target:  5'- gGGCGAGaaguaccggguGCCGCUGaACCugGGCGAaguCGGCGa -3'
miRNA:   3'- -CCGCUU-----------CGGCGGC-UGG--CUGCU---GCUGC- -5'
8224 5' -58.6 NC_001978.2 + 12765 0.76 0.125118
Target:  5'- uGGCGAcGCUGCCGACCGGCauuACG-CGc -3'
miRNA:   3'- -CCGCUuCGGCGGCUGGCUGc--UGCuGC- -5'
8224 5' -58.6 NC_001978.2 + 36709 0.7 0.302335
Target:  5'- cGGCGGAGCCugagcCCGucacggaGCCGGaGACGGCGc -3'
miRNA:   3'- -CCGCUUCGGc----GGC-------UGGCUgCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 3615 0.7 0.30307
Target:  5'- uGGCGu-GCCGCUaacuCCGGCGuCGACa -3'
miRNA:   3'- -CCGCuuCGGCGGcu--GGCUGCuGCUGc -5'
8224 5' -58.6 NC_001978.2 + 13475 0.7 0.310493
Target:  5'- -uCGGAGCUuGCCGAagaUGACGGCGGCu -3'
miRNA:   3'- ccGCUUCGG-CGGCUg--GCUGCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 36108 0.7 0.318054
Target:  5'- cGCGAGGaaGCCGaaGCCGACGACc--- -3'
miRNA:   3'- cCGCUUCggCGGC--UGGCUGCUGcugc -5'
8224 5' -58.6 NC_001978.2 + 41408 0.7 0.318054
Target:  5'- gGGCGggGCgGCU--CCGAaguUGGCGGCGu -3'
miRNA:   3'- -CCGCuuCGgCGGcuGGCU---GCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 20242 0.69 0.324977
Target:  5'- aGGCcgugaagGAAGCCGCCGaaGCCGcUGAgGGCa -3'
miRNA:   3'- -CCG-------CUUCGGCGGC--UGGCuGCUgCUGc -5'
8224 5' -58.6 NC_001978.2 + 33915 0.72 0.230333
Target:  5'- uGGCGGAGCaucgggggaGgCGACCGGCGAagagaucaCGGCGc -3'
miRNA:   3'- -CCGCUUCGg--------CgGCUGGCUGCU--------GCUGC- -5'
8224 5' -58.6 NC_001978.2 + 32630 0.72 0.228572
Target:  5'- cGGCGcuGCCuacaaccgggaccgGCCGACUGACGcUGACGc -3'
miRNA:   3'- -CCGCuuCGG--------------CGGCUGGCUGCuGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 35984 0.72 0.227988
Target:  5'- gGGCGAcaccccggagacuGCCGCCGACCcgGGCGuuguguGCGACa -3'
miRNA:   3'- -CCGCUu------------CGGCGGCUGG--CUGC------UGCUGc -5'
8224 5' -58.6 NC_001978.2 + 19613 0.69 0.325753
Target:  5'- uGGUGAccgaCGCCGACauucagGACGGCGACa -3'
miRNA:   3'- -CCGCUucg-GCGGCUGg-----CUGCUGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.