miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8247 3' -50.3 NC_001987.1 + 73914 1.14 0.003571
Target:  5'- gGCCAAGACAAACAGGCAACGAUCCCCc -3'
miRNA:   3'- -CGGUUCUGUUUGUCCGUUGCUAGGGG- -5'
8247 3' -50.3 NC_001987.1 + 43363 0.74 0.757467
Target:  5'- -aCAGGcACAugaagcuauuuGAUAGGUAGCGGUCCCUg -3'
miRNA:   3'- cgGUUC-UGU-----------UUGUCCGUUGCUAGGGG- -5'
8247 3' -50.3 NC_001987.1 + 80902 0.67 0.976119
Target:  5'- aGUC-AGGCAcuucaacAAUAGGCAAagaaGAUCCUCu -3'
miRNA:   3'- -CGGuUCUGU-------UUGUCCGUUg---CUAGGGG- -5'
8247 3' -50.3 NC_001987.1 + 98809 0.66 0.985216
Target:  5'- -aCAGGaACAAGCAGGCAcaACcugCUCCg -3'
miRNA:   3'- cgGUUC-UGUUUGUCCGU--UGcuaGGGG- -5'
8247 3' -50.3 NC_001987.1 + 100882 0.66 0.989985
Target:  5'- aUCAGGAC--ACAGGCAGC--UCCUa -3'
miRNA:   3'- cGGUUCUGuuUGUCCGUUGcuAGGGg -5'
8247 3' -50.3 NC_001987.1 + 89601 0.68 0.967575
Target:  5'- uCCAAGACGAGCuuGGGCAAU--UCCa- -3'
miRNA:   3'- cGGUUCUGUUUG--UCCGUUGcuAGGgg -5'
8247 3' -50.3 NC_001987.1 + 548 0.67 0.978884
Target:  5'- aGUUcGGACAGugAGGaagaaaGGUCCCCu -3'
miRNA:   3'- -CGGuUCUGUUugUCCguug--CUAGGGG- -5'
8247 3' -50.3 NC_001987.1 + 54296 0.66 0.989985
Target:  5'- cCCAGGcaGCAAAUAGGUaaaaacuggGACGAUgCCa -3'
miRNA:   3'- cGGUUC--UGUUUGUCCG---------UUGCUAgGGg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.