miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8318 3' -49.2 NC_002067.1 + 15856 0.66 0.886924
Target:  5'- uUGGCcggcguguacuUGUAGGAGUCGGgcaGGUaCAAGg -3'
miRNA:   3'- gACCG-----------ACAUCUUCGGUCa--UCAaGUUC- -5'
8318 3' -49.2 NC_002067.1 + 21875 0.67 0.813241
Target:  5'- -cGGCUGcAGcAGCgAGUcGUUCAGGu -3'
miRNA:   3'- gaCCGACaUCuUCGgUCAuCAAGUUC- -5'
8318 3' -49.2 NC_002067.1 + 22138 0.74 0.445254
Target:  5'- -cGGCgGcGGAAGCCAGUgcgGGUUCAAa -3'
miRNA:   3'- gaCCGaCaUCUUCGGUCA---UCAAGUUc -5'
8318 3' -49.2 NC_002067.1 + 33072 1.1 0.001689
Target:  5'- gCUGGCUGUAGAAGCCAGUAGUUCAAGa -3'
miRNA:   3'- -GACCGACAUCUUCGGUCAUCAAGUUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.