miRNA display CGI


Results 1 - 8 of 8 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8320 3' -57.1 NC_002067.1 + 33152 0.66 0.459077
Target:  5'- gUCCAGaauguaGCCCCUGCUcaguuggGUGuuCUGGcUCc -3'
miRNA:   3'- -GGGUCg-----CGGGGACGA-------UACu-GACCuAG- -5'
8320 3' -57.1 NC_002067.1 + 19603 0.67 0.429978
Target:  5'- gCCCGGCgGCCCgUGCgu---CUGGcgCg -3'
miRNA:   3'- -GGGUCG-CGGGgACGauacuGACCuaG- -5'
8320 3' -57.1 NC_002067.1 + 24375 0.68 0.364456
Target:  5'- gCUAGCGCCggcgCCUGCUAcGGCcGcGGUCg -3'
miRNA:   3'- gGGUCGCGG----GGACGAUaCUGaC-CUAG- -5'
8320 3' -57.1 NC_002067.1 + 6575 0.68 0.347047
Target:  5'- -aCAGCGCCCCccGCggAUG-CUGGcgCg -3'
miRNA:   3'- ggGUCGCGGGGa-CGa-UACuGACCuaG- -5'
8320 3' -57.1 NC_002067.1 + 768 0.7 0.269087
Target:  5'- aCCCAGUGgguaCCCUGCU---GCUGGAa- -3'
miRNA:   3'- -GGGUCGCg---GGGACGAuacUGACCUag -5'
8320 3' -57.1 NC_002067.1 + 26150 0.74 0.139214
Target:  5'- aUCAGCgagauGCCCCUGCgcc-GCUGGAUCa -3'
miRNA:   3'- gGGUCG-----CGGGGACGauacUGACCUAG- -5'
8320 3' -57.1 NC_002067.1 + 18784 0.76 0.101389
Target:  5'- gCCCGGCGCCaCCUGCU-UGAUggGGcgCa -3'
miRNA:   3'- -GGGUCGCGG-GGACGAuACUGa-CCuaG- -5'
8320 3' -57.1 NC_002067.1 + 30973 1.12 0.000209
Target:  5'- gCCCAGCGCCCCUGCUAUGACUGGAUCa -3'
miRNA:   3'- -GGGUCGCGGGGACGAUACUGACCUAG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.