miRNA display CGI


Results 1 - 15 of 15 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8324 3' -56.9 NC_002067.1 + 20929 0.66 0.568401
Target:  5'- gUCCACCCag--ACCGUG-CaGGGGCCc -3'
miRNA:   3'- -GGGUGGGgaagUGGCACuGcCUCUGG- -5'
8324 3' -56.9 NC_002067.1 + 25461 0.66 0.565141
Target:  5'- uCCCACCCCUuacauguggagcuaUCAgCCccaGAUGGGccuGGCCg -3'
miRNA:   3'- -GGGUGGGGA--------------AGU-GGca-CUGCCU---CUGG- -5'
8324 3' -56.9 NC_002067.1 + 30257 0.66 0.546762
Target:  5'- aCCACCaCCUggACCucgaGAUGGAcGGCCa -3'
miRNA:   3'- gGGUGG-GGAagUGGca--CUGCCU-CUGG- -5'
8324 3' -56.9 NC_002067.1 + 26082 0.66 0.546762
Target:  5'- -aCGCCCaguuuuucaaCUUCGCCGUGGauuucuacGAGGCCa -3'
miRNA:   3'- ggGUGGG----------GAAGUGGCACUgc------CUCUGG- -5'
8324 3' -56.9 NC_002067.1 + 26976 0.66 0.525392
Target:  5'- cUCCGCCCCcgccgCGCCGaGAUcuGGACCu -3'
miRNA:   3'- -GGGUGGGGaa---GUGGCaCUGccUCUGG- -5'
8324 3' -56.9 NC_002067.1 + 11111 0.67 0.493959
Target:  5'- -gCACCUgUgggACC-UGGCGGAGGCCa -3'
miRNA:   3'- ggGUGGGgAag-UGGcACUGCCUCUGG- -5'
8324 3' -56.9 NC_002067.1 + 14616 0.67 0.483672
Target:  5'- aCCACCCCggacgUCACC-UGcggcGCGGAG-Ca -3'
miRNA:   3'- gGGUGGGGa----AGUGGcAC----UGCCUCuGg -5'
8324 3' -56.9 NC_002067.1 + 10638 0.67 0.473488
Target:  5'- uCCCACCCCcccggcgacCACCGcGACcGcGGCCg -3'
miRNA:   3'- -GGGUGGGGaa-------GUGGCaCUGcCuCUGG- -5'
8324 3' -56.9 NC_002067.1 + 29244 0.69 0.35148
Target:  5'- aCCCGCCCCcuUUUAuacccccCCGU--CGGGGACCc -3'
miRNA:   3'- -GGGUGGGG--AAGU-------GGCAcuGCCUCUGG- -5'
8324 3' -56.9 NC_002067.1 + 25771 0.7 0.343957
Target:  5'- aCCCGCCCCaUUACCGggagaUGACcGGcGGCg -3'
miRNA:   3'- -GGGUGGGGaAGUGGC-----ACUG-CCuCUGg -5'
8324 3' -56.9 NC_002067.1 + 10971 0.74 0.190604
Target:  5'- cCCCGCgCCg-CGCaCGUGGCGGcGGCCa -3'
miRNA:   3'- -GGGUGgGGaaGUG-GCACUGCCuCUGG- -5'
8324 3' -56.9 NC_002067.1 + 30178 0.75 0.157101
Target:  5'- uCCCugcaagaGCUCCUcUCGCUG-GGCGGGGACCg -3'
miRNA:   3'- -GGG-------UGGGGA-AGUGGCaCUGCCUCUGG- -5'
8324 3' -56.9 NC_002067.1 + 1293 0.75 0.149083
Target:  5'- aCCCACCCCagUCAgacCCaGUGGCGaGAGGCg -3'
miRNA:   3'- -GGGUGGGGa-AGU---GG-CACUGC-CUCUGg -5'
8324 3' -56.9 NC_002067.1 + 15288 0.79 0.077796
Target:  5'- uCCCGCCCCUUCgACCGUGgacGCGGuucauuGACa -3'
miRNA:   3'- -GGGUGGGGAAG-UGGCAC---UGCCu-----CUGg -5'
8324 3' -56.9 NC_002067.1 + 29923 1.05 0.000985
Target:  5'- gCCCACCCCUUCACCGUG-CGGAGACCa -3'
miRNA:   3'- -GGGUGGGGAAGUGGCACuGCCUCUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.