miRNA display CGI


Results 1 - 7 of 7 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8325 5' -55 NC_002067.1 + 8895 0.66 0.578427
Target:  5'- uAGGUgCCUCAACcgaGCGAGCUCAg--- -3'
miRNA:   3'- cUCCG-GGAGUUGa--UGCUCGAGUacca -5'
8325 5' -55 NC_002067.1 + 23625 0.66 0.567027
Target:  5'- cAGGCCCUggagCAGCgGCGcaAGCUCAUGc- -3'
miRNA:   3'- cUCCGGGA----GUUGaUGC--UCGAGUACca -5'
8325 5' -55 NC_002067.1 + 30409 0.67 0.489316
Target:  5'- cAGGCaaagaUCAcCUACGAGCUCGUGu- -3'
miRNA:   3'- cUCCGgg---AGUuGAUGCUCGAGUACca -5'
8325 5' -55 NC_002067.1 + 26044 0.67 0.478604
Target:  5'- cAGGCuCCUgGAagACGAGCUCAcGGUc -3'
miRNA:   3'- cUCCG-GGAgUUgaUGCUCGAGUaCCA- -5'
8325 5' -55 NC_002067.1 + 28153 0.73 0.218231
Target:  5'- --cGCCCUCAACcGCGAGCU-GUGGg -3'
miRNA:   3'- cucCGGGAGUUGaUGCUCGAgUACCa -5'
8325 5' -55 NC_002067.1 + 26786 0.79 0.086249
Target:  5'- -uGGCCCcgcgCAGCUACGGGCUCAUGc- -3'
miRNA:   3'- cuCCGGGa---GUUGAUGCUCGAGUACca -5'
8325 5' -55 NC_002067.1 + 29799 1.07 0.000696
Target:  5'- cGAGGCCCUCAACUACGAGCUCAUGGUc -3'
miRNA:   3'- -CUCCGGGAGUUGAUGCUCGAGUACCA- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.