miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8333 3' -62.4 NC_002067.1 + 8357 0.66 0.265231
Target:  5'- gGGCAGGgGCGGCagaggcacguCGGCguggCGCUCggGCa -3'
miRNA:   3'- -UCGUUCgCGCCG----------GCCGa---GUGGGa-CGg -5'
8333 3' -62.4 NC_002067.1 + 11637 0.66 0.265231
Target:  5'- uGGC-AGC-CGaGCCGGCgCGCCUuggagGCCg -3'
miRNA:   3'- -UCGuUCGcGC-CGGCCGaGUGGGa----CGG- -5'
8333 3' -62.4 NC_002067.1 + 22814 0.66 0.258568
Target:  5'- cGC-AGCGCGcugauaaaGuuGGUguaaUCAUCCUGCCc -3'
miRNA:   3'- uCGuUCGCGC--------CggCCG----AGUGGGACGG- -5'
8333 3' -62.4 NC_002067.1 + 15356 0.66 0.258568
Target:  5'- cGCAAGagccgGCGGgCGGacggaUCGCCCaggcGCCa -3'
miRNA:   3'- uCGUUCg----CGCCgGCCg----AGUGGGa---CGG- -5'
8333 3' -62.4 NC_002067.1 + 28757 0.66 0.252043
Target:  5'- uGCucGCGCaaGGgCGGCagACUCUGCUg -3'
miRNA:   3'- uCGuuCGCG--CCgGCCGagUGGGACGG- -5'
8333 3' -62.4 NC_002067.1 + 19778 0.66 0.245654
Target:  5'- gAGUAuaguuGCGCGcGUCGGCgacCACCgaGUCg -3'
miRNA:   3'- -UCGUu----CGCGC-CGGCCGa--GUGGgaCGG- -5'
8333 3' -62.4 NC_002067.1 + 16098 0.66 0.245654
Target:  5'- cAGCAGGUGCuGCCccaGGCggUGCUgCUGCCg -3'
miRNA:   3'- -UCGUUCGCGcCGG---CCGa-GUGG-GACGG- -5'
8333 3' -62.4 NC_002067.1 + 2277 0.66 0.23328
Target:  5'- uGC-AGUGUcgGGCgGGaggCACCCUGCUg -3'
miRNA:   3'- uCGuUCGCG--CCGgCCga-GUGGGACGG- -5'
8333 3' -62.4 NC_002067.1 + 18515 0.66 0.23328
Target:  5'- gGGCGccUGCGGCUGGCguagUACCgggUGCCg -3'
miRNA:   3'- -UCGUucGCGCCGGCCGa---GUGGg--ACGG- -5'
8333 3' -62.4 NC_002067.1 + 22546 0.66 0.227292
Target:  5'- uAGCAGGUGacccaGGUacgaguugCGGUUUACgCUGCCa -3'
miRNA:   3'- -UCGUUCGCg----CCG--------GCCGAGUGgGACGG- -5'
8333 3' -62.4 NC_002067.1 + 2078 0.67 0.221434
Target:  5'- -cCAuGUGCuGCUGGCuUUACCCUGCUc -3'
miRNA:   3'- ucGUuCGCGcCGGCCG-AGUGGGACGG- -5'
8333 3' -62.4 NC_002067.1 + 5186 0.67 0.209552
Target:  5'- uGCuGGUGCugaaacgGGCaCGGUcuUCGCCCUGCg -3'
miRNA:   3'- uCGuUCGCG-------CCG-GCCG--AGUGGGACGg -5'
8333 3' -62.4 NC_002067.1 + 10516 0.67 0.20463
Target:  5'- cGGCGAGCG-GGaCUuGgUCACCCcGCCg -3'
miRNA:   3'- -UCGUUCGCgCC-GGcCgAGUGGGaCGG- -5'
8333 3' -62.4 NC_002067.1 + 5941 0.67 0.20463
Target:  5'- gAGgAGGauuuGauGuuGGCUUGCCCUGCCg -3'
miRNA:   3'- -UCgUUCg---CgcCggCCGAGUGGGACGG- -5'
8333 3' -62.4 NC_002067.1 + 11513 0.67 0.199278
Target:  5'- cGUGAGCGCGaGCCGGCg-GCgCgaGCUg -3'
miRNA:   3'- uCGUUCGCGC-CGGCCGagUG-GgaCGG- -5'
8333 3' -62.4 NC_002067.1 + 15197 0.67 0.194049
Target:  5'- -aCAAGCGCGGgCGGaCUgcCACCgCcGCCg -3'
miRNA:   3'- ucGUUCGCGCCgGCC-GA--GUGG-GaCGG- -5'
8333 3' -62.4 NC_002067.1 + 5060 0.67 0.194049
Target:  5'- gGGCGuccAGCGCGGCCaGCgUCAugUCCUuCCa -3'
miRNA:   3'- -UCGU---UCGCGCCGGcCG-AGU--GGGAcGG- -5'
8333 3' -62.4 NC_002067.1 + 17546 0.68 0.179078
Target:  5'- aGGuCAAGgGUGGCgGGUUucauuaCACCCgugGCCa -3'
miRNA:   3'- -UC-GUUCgCGCCGgCCGA------GUGGGa--CGG- -5'
8333 3' -62.4 NC_002067.1 + 17671 0.68 0.17432
Target:  5'- cGCAucuGGcCGCGGCCGcuuCUCGCCCUucgGCg -3'
miRNA:   3'- uCGU---UC-GCGCCGGCc--GAGUGGGA---CGg -5'
8333 3' -62.4 NC_002067.1 + 13126 0.69 0.156398
Target:  5'- cGGCAGG-GUGaGCCGGC-CGCgCUUGCUg -3'
miRNA:   3'- -UCGUUCgCGC-CGGCCGaGUG-GGACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.