miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
835 3' -55.5 NC_000898.1 + 4630 0.66 0.910596
Target:  5'- --gGGGAUGaggGCgGGGGGAAGGGcAUGa -3'
miRNA:   3'- aagCCCUACa--CG-CCUCUUUCCC-UGCa -5'
835 3' -55.5 NC_000898.1 + 8185 0.66 0.910596
Target:  5'- --gGGGGUGuUGUGGuagaugggguAGGGAGGGAUGa -3'
miRNA:   3'- aagCCCUAC-ACGCC----------UCUUUCCCUGCa -5'
835 3' -55.5 NC_000898.1 + 157798 0.66 0.910596
Target:  5'- --gGGGAUGaggGCgGGGGGAAGGGcAUGa -3'
miRNA:   3'- aagCCCUACa--CG-CCUCUUUCCC-UGCa -5'
835 3' -55.5 NC_000898.1 + 161352 0.66 0.910596
Target:  5'- --gGGGGUGuUGUGGuagaugggguAGGGAGGGAUGa -3'
miRNA:   3'- aagCCCUAC-ACGCC----------UCUUUCCCUGCa -5'
835 3' -55.5 NC_000898.1 + 3392 0.67 0.874526
Target:  5'- -gCGGuGGUG-GCGGAGGcggugcgccagguGGGGGCGUg -3'
miRNA:   3'- aaGCC-CUACaCGCCUCUu------------UCCCUGCA- -5'
835 3' -55.5 NC_000898.1 + 156559 0.67 0.874526
Target:  5'- -gCGGuGGUG-GCGGAGGcggugcgccagguGGGGGCGUg -3'
miRNA:   3'- aaGCC-CUACaCGCCUCUu------------UCCCUGCA- -5'
835 3' -55.5 NC_000898.1 + 156085 0.68 0.854834
Target:  5'- -aCGGGAgaggGCGGAGAcaacGGGGAgGg -3'
miRNA:   3'- aaGCCCUaca-CGCCUCUu---UCCCUgCa -5'
835 3' -55.5 NC_000898.1 + 2917 0.68 0.854834
Target:  5'- -aCGGGAgaggGCGGAGAcaacGGGGAgGg -3'
miRNA:   3'- aaGCCCUaca-CGCCUCUu---UCCCUgCa -5'
835 3' -55.5 NC_000898.1 + 656 0.68 0.846886
Target:  5'- -aCGGuagcGGUG-GCGGuGggGGGGAUGUg -3'
miRNA:   3'- aaGCC----CUACaCGCCuCuuUCCCUGCA- -5'
835 3' -55.5 NC_000898.1 + 153824 0.68 0.846886
Target:  5'- -aCGGuagcGGUG-GCGGuGggGGGGAUGUg -3'
miRNA:   3'- aaGCC----CUACaCGCCuCuuUCCCUGCA- -5'
835 3' -55.5 NC_000898.1 + 3866 0.68 0.830405
Target:  5'- --gGGGAUGgagggaGgGGGGAccgAGGGGGCGUg -3'
miRNA:   3'- aagCCCUACa-----CgCCUCU---UUCCCUGCA- -5'
835 3' -55.5 NC_000898.1 + 157034 0.68 0.830405
Target:  5'- --gGGGAUGgagggaGgGGGGAccgAGGGGGCGUg -3'
miRNA:   3'- aagCCCUACa-----CgCCUCU---UUCCCUGCA- -5'
835 3' -55.5 NC_000898.1 + 2266 1.05 0.006174
Target:  5'- aUUCGGGAUGUGCGGAGAAAGGGACGUc -3'
miRNA:   3'- -AAGCCCUACACGCCUCUUUCCCUGCA- -5'
835 3' -55.5 NC_000898.1 + 155433 1.05 0.006174
Target:  5'- aUUCGGGAUGUGCGGAGAAAGGGACGUc -3'
miRNA:   3'- -AAGCCCUACACGCCUCUUUCCCUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.