Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8371 | 3' | -63.4 | NC_002067.1 | + | 222 | 0.66 | 0.229745 |
Target: 5'- -uCCCGCgGCCAcGCCCGGAuaugagguaauuCUGGg -3' miRNA: 3'- gcGGGCGgCGGUcCGGGUCUu-----------GACCg -5' |
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8371 | 3' | -63.4 | NC_002067.1 | + | 3766 | 0.66 | 0.236922 |
Target: 5'- aGCCCugaGCCGCCAGcuggccGCCCuGAcccaGCaGGUg -3' miRNA: 3'- gCGGG---CGGCGGUC------CGGGuCU----UGaCCG- -5' |
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8371 | 3' | -63.4 | NC_002067.1 | + | 5313 | 0.73 | 0.073644 |
Target: 5'- gGCCaCGCCGCCgAGGCCCucaacuacGAGCUcauGGUc -3' miRNA: 3'- gCGG-GCGGCGG-UCCGGGu-------CUUGA---CCG- -5' |
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8371 | 3' | -63.4 | NC_002067.1 | + | 6288 | 0.66 | 0.225062 |
Target: 5'- aGUCUGCCGCCcuuGcGCgagCAGAACgggGGCa -3' miRNA: 3'- gCGGGCGGCGGu--C-CGg--GUCUUGa--CCG- -5' |
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8371 | 3' | -63.4 | NC_002067.1 | + | 8044 | 0.8 | 0.019622 |
Target: 5'- aGCCCGCgcgggaGCCAGGUCCAGAuCUcGGCg -3' miRNA: 3'- gCGGGCGg-----CGGUCCGGGUCUuGA-CCG- -5' |
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8371 | 3' | -63.4 | NC_002067.1 | + | 8123 | 0.71 | 0.1031 |
Target: 5'- cCGCCC-CCGCCGcGCCgAGAucuggacCUGGCu -3' miRNA: 3'- -GCGGGcGGCGGUcCGGgUCUu------GACCG- -5' |
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8371 | 3' | -63.4 | NC_002067.1 | + | 9637 | 0.71 | 0.089675 |
Target: 5'- aGCCgGUgucaggGCCAGGCCUGGGGCaUGGCc -3' miRNA: 3'- gCGGgCGg-----CGGUCCGGGUCUUG-ACCG- -5' |
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8371 | 3' | -63.4 | NC_002067.1 | + | 10006 | 0.71 | 0.094833 |
Target: 5'- gCGCCCGggGCCAGGUCCucGAGCaugaGGCg -3' miRNA: 3'- -GCGGGCggCGGUCCGGGu-CUUGa---CCG- -5' |
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8371 | 3' | -63.4 | NC_002067.1 | + | 10052 | 0.71 | 0.089675 |
Target: 5'- gGCCCcggGCgCGCCGGccaCCCAGcGCUGGCc -3' miRNA: 3'- gCGGG---CG-GCGGUCc--GGGUCuUGACCG- -5' |
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8371 | 3' | -63.4 | NC_002067.1 | + | 11562 | 0.66 | 0.243046 |
Target: 5'- aGCCUG-CGCCGGGCgCUGGuagggGGCg -3' miRNA: 3'- gCGGGCgGCGGUCCG-GGUCuuga-CCG- -5' |
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8371 | 3' | -63.4 | NC_002067.1 | + | 11611 | 0.67 | 0.182572 |
Target: 5'- gCGCCCGgCG-CAGGCUCAGcaucAGCUcGCg -3' miRNA: 3'- -GCGGGCgGCgGUCCGGGUC----UUGAcCG- -5' |
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8371 | 3' | -63.4 | NC_002067.1 | + | 11653 | 0.68 | 0.159758 |
Target: 5'- gCGCCUuggagGCCGCCuacGGUCCAGAGgacUUGGa -3' miRNA: 3'- -GCGGG-----CGGCGGu--CCGGGUCUU---GACCg -5' |
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8371 | 3' | -63.4 | NC_002067.1 | + | 11832 | 0.69 | 0.139548 |
Target: 5'- uGCagCGCCGCCcuuauggcgGGGUCCGGGGCUuGCu -3' miRNA: 3'- gCGg-GCGGCGG---------UCCGGGUCUUGAcCG- -5' |
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8371 | 3' | -63.4 | NC_002067.1 | + | 15244 | 0.66 | 0.21371 |
Target: 5'- cCGCCCGCgcuuguaagCGCCccacGGaGCgCGGAAgUGGCc -3' miRNA: 3'- -GCGGGCG---------GCGG----UC-CGgGUCUUgACCG- -5' |
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8371 | 3' | -63.4 | NC_002067.1 | + | 15412 | 0.69 | 0.13214 |
Target: 5'- cCGUCCGCCcGCC-GGCUCuugcguCUGGCa -3' miRNA: 3'- -GCGGGCGG-CGGuCCGGGucuu--GACCG- -5' |
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8371 | 3' | -63.4 | NC_002067.1 | + | 16031 | 0.71 | 0.100272 |
Target: 5'- cCGCuCUGCCGCCuGGUCCAGGAUg--- -3' miRNA: 3'- -GCG-GGCGGCGGuCCGGGUCUUGaccg -5' |
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8371 | 3' | -63.4 | NC_002067.1 | + | 16332 | 0.68 | 0.165873 |
Target: 5'- gGUCUGCaCGcCCAGGCCCGGcGCcaccugcuugauggGGCg -3' miRNA: 3'- gCGGGCG-GC-GGUCCGGGUCuUGa-------------CCG- -5' |
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8371 | 3' | -63.4 | NC_002067.1 | + | 16599 | 0.66 | 0.230928 |
Target: 5'- gCGUuuGCUgGCUGGGCgCCuGcGGCUGGCg -3' miRNA: 3'- -GCGggCGG-CGGUCCG-GGuC-UUGACCG- -5' |
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8371 | 3' | -63.4 | NC_002067.1 | + | 16854 | 0.72 | 0.087196 |
Target: 5'- gGCCCGCCGCCGgcggcGGUUCAGGccGCUGccuGCc -3' miRNA: 3'- gCGGGCGGCGGU-----CCGGGUCU--UGAC---CG- -5' |
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8371 | 3' | -63.4 | NC_002067.1 | + | 17605 | 1.11 | 0.000059 |
Target: 5'- cCGCCCGCCGCCAGGCCCAGAACUGGCa -3' miRNA: 3'- -GCGGGCGGCGGUCCGGGUCUUGACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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