miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8389 3' -37.8 NC_002072.2 + 16895 0.66 1
Target:  5'- ---cUUGGGUAGAUAauAAAGAaguAGCUUCa -3'
miRNA:   3'- uaaaAAUCCGUUUAU--UUUUU---UCGGGG- -5'
8389 3' -37.8 NC_002072.2 + 22472 0.67 0.999999
Target:  5'- ----gUGGGUAguAAUGAGAAAAugguGUCCCa -3'
miRNA:   3'- uaaaaAUCCGU--UUAUUUUUUU----CGGGG- -5'
8389 3' -37.8 NC_002072.2 + 34636 0.68 0.999995
Target:  5'- ----gUGGGCGGGUuu-AAuAGCCCg -3'
miRNA:   3'- uaaaaAUCCGUUUAuuuUUuUCGGGg -5'
8389 3' -37.8 NC_002072.2 + 11505 0.7 0.999945
Target:  5'- -------uGUAAAUuaaGGAGAAAGCCCCa -3'
miRNA:   3'- uaaaaaucCGUUUA---UUUUUUUCGGGG- -5'
8389 3' -37.8 NC_002072.2 + 19970 0.7 0.999945
Target:  5'- uUUUUUAGGCGuGUAAucAAuccacGGCuCCCa -3'
miRNA:   3'- uAAAAAUCCGUuUAUUuuUU-----UCG-GGG- -5'
8389 3' -37.8 NC_002072.2 + 18403 0.71 0.999851
Target:  5'- ------cGGCuuGAAUAuucAGGAAGCCCCu -3'
miRNA:   3'- uaaaaauCCG--UUUAUu--UUUUUCGGGG- -5'
8389 3' -37.8 NC_002072.2 + 1045 0.73 0.997876
Target:  5'- aAUUUUUAGGgAAAUAAAAAGAuGUCUa -3'
miRNA:   3'- -UAAAAAUCCgUUUAUUUUUUU-CGGGg -5'
8389 3' -37.8 NC_002072.2 + 3297 0.74 0.996747
Target:  5'- ----cUGGGUcAGUAauaucAAAAAAGCCCCc -3'
miRNA:   3'- uaaaaAUCCGuUUAU-----UUUUUUCGGGG- -5'
8389 3' -37.8 NC_002072.2 + 1855 0.8 0.918547
Target:  5'- uGUUUcUGGGCAAGUAAAGGu-GCCCa -3'
miRNA:   3'- -UAAAaAUCCGUUUAUUUUUuuCGGGg -5'
8389 3' -37.8 NC_002072.2 + 33568 0.83 0.826418
Target:  5'- ------uGGUAAAUAAAAAAAGCCCa -3'
miRNA:   3'- uaaaaauCCGUUUAUUUUUUUCGGGg -5'
8389 3' -37.8 NC_002072.2 + 22890 1.16 0.018793
Target:  5'- gAUUUUUAGGCAAAUAAAAAAAGCCCCa -3'
miRNA:   3'- -UAAAAAUCCGUUUAUUUUUUUCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.