miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8419 3' -46.1 NC_002166.1 + 470 0.67 0.984711
Target:  5'- aCUuUCGCCGUugGUUGcguggGAGUGGaucuGGa -3'
miRNA:   3'- -GAuAGCGGUAugCAAU-----UUUACCg---CCc -5'
8419 3' -46.1 NC_002166.1 + 15275 0.68 0.971417
Target:  5'- ---gCGCCA-ACGUUGu--UGGCGGu -3'
miRNA:   3'- gauaGCGGUaUGCAAUuuuACCGCCc -5'
8419 3' -46.1 NC_002166.1 + 23260 0.68 0.971417
Target:  5'- -gAUUGCCAUGCGUaAGGcUGGCa-- -3'
miRNA:   3'- gaUAGCGGUAUGCAaUUUuACCGccc -5'
8419 3' -46.1 NC_002166.1 + 7552 0.68 0.967984
Target:  5'- -cAUCGCCAacUGCGgcugAAAAUGGUGc- -3'
miRNA:   3'- gaUAGCGGU--AUGCaa--UUUUACCGCcc -5'
8419 3' -46.1 NC_002166.1 + 13490 0.69 0.935604
Target:  5'- -cAUCG-UAUGCGUU----UGGCGGGg -3'
miRNA:   3'- gaUAGCgGUAUGCAAuuuuACCGCCC- -5'
8419 3' -46.1 NC_002166.1 + 33227 0.7 0.929716
Target:  5'- cCUGUCGCUGUA-GccAAAAUGGCGuGGc -3'
miRNA:   3'- -GAUAGCGGUAUgCaaUUUUACCGC-CC- -5'
8419 3' -46.1 NC_002166.1 + 11079 0.71 0.879495
Target:  5'- -gAUCGCCAUGCGggcgUGAcggcguuucAGUGGCGc- -3'
miRNA:   3'- gaUAGCGGUAUGCa---AUU---------UUACCGCcc -5'
8419 3' -46.1 NC_002166.1 + 8646 0.71 0.879495
Target:  5'- ----aGCCAU-CGgagccGGAGUGGCGGGg -3'
miRNA:   3'- gauagCGGUAuGCaa---UUUUACCGCCC- -5'
8419 3' -46.1 NC_002166.1 + 3290 0.75 0.70459
Target:  5'- -cAUCGCCAccCGgc--AAUGGCGGGa -3'
miRNA:   3'- gaUAGCGGUauGCaauuUUACCGCCC- -5'
8419 3' -46.1 NC_002166.1 + 17257 0.83 0.283471
Target:  5'- gCUAUCGCCugaGCGUUAGugguGAUGGCGGa -3'
miRNA:   3'- -GAUAGCGGua-UGCAAUU----UUACCGCCc -5'
8419 3' -46.1 NC_002166.1 + 5264 1.12 0.004755
Target:  5'- uCUAUCGCCAUACGUUAAAAUGGCGGGu -3'
miRNA:   3'- -GAUAGCGGUAUGCAAUUUUACCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.