miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8425 5' -48.3 NC_002166.1 + 18167 0.66 0.956663
Target:  5'- cCCAGCCCacgccaguaAUAUCuuAcCGGAACGGCg -3'
miRNA:   3'- aGGUCGGGc--------UGUAGuuU-GCUUUGUUG- -5'
8425 5' -48.3 NC_002166.1 + 19056 0.66 0.936652
Target:  5'- aCCGGCaCgGGCA-CGAACuGGACGGCa -3'
miRNA:   3'- aGGUCG-GgCUGUaGUUUGcUUUGUUG- -5'
8425 5' -48.3 NC_002166.1 + 6849 0.67 0.91831
Target:  5'- gCCAGCCUGAUAgc--GCGAucAAUAGCc -3'
miRNA:   3'- aGGUCGGGCUGUaguuUGCU--UUGUUG- -5'
8425 5' -48.3 NC_002166.1 + 17426 0.67 0.904484
Target:  5'- aCCGGCugCCGugGUgAcGGCGAAGCGAUc -3'
miRNA:   3'- aGGUCG--GGCugUAgU-UUGCUUUGUUG- -5'
8425 5' -48.3 NC_002166.1 + 19304 0.68 0.881403
Target:  5'- gCCAGCCC---AUCAAcCGAGAUAAUg -3'
miRNA:   3'- aGGUCGGGcugUAGUUuGCUUUGUUG- -5'
8425 5' -48.3 NC_002166.1 + 38116 0.68 0.873107
Target:  5'- -aCAGCCCauGACAggCAGACGAugauGCAGa -3'
miRNA:   3'- agGUCGGG--CUGUa-GUUUGCUu---UGUUg -5'
8425 5' -48.3 NC_002166.1 + 24791 0.68 0.864521
Target:  5'- aUCCAGCaccuCCGAUA-CGGAauugcCGGAACAGCg -3'
miRNA:   3'- -AGGUCG----GGCUGUaGUUU-----GCUUUGUUG- -5'
8425 5' -48.3 NC_002166.1 + 8351 0.7 0.807463
Target:  5'- aCCAGCCCGGCAccccacUCAAcCc--GCAACa -3'
miRNA:   3'- aGGUCGGGCUGU------AGUUuGcuuUGUUG- -5'
8425 5' -48.3 NC_002166.1 + 7223 0.71 0.742774
Target:  5'- aUCCAGUCa-ACAUCGAAUGAguAGCGAUa -3'
miRNA:   3'- -AGGUCGGgcUGUAGUUUGCU--UUGUUG- -5'
8425 5' -48.3 NC_002166.1 + 14267 0.73 0.637933
Target:  5'- aCCGGCaaaGAUAUCuaccuGGACGGAACAGCg -3'
miRNA:   3'- aGGUCGgg-CUGUAG-----UUUGCUUUGUUG- -5'
8425 5' -48.3 NC_002166.1 + 15589 1.12 0.002153
Target:  5'- gUCCAGCCCGACAUCAAACGAAACAACg -3'
miRNA:   3'- -AGGUCGGGCUGUAGUUUGCUUUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.