Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 8427 | 3' | -50.3 | NC_002166.1 | + | 16327 | 0.66 | 0.89971 |
|
Target: 5'- uCGAGCUGAaCugGggAUUC-CcGGCg -3' miRNA: 3'- uGCUCGACUaGugCuaUAAGcGuCCG- -5' |
|||||||
| 8427 | 3' | -50.3 | NC_002166.1 | + | 4483 | 0.68 | 0.792355 |
|
Target: 5'- cUGAGCcagcaGAUCACGAaugGUaagacggCGCAGGCc -3' miRNA: 3'- uGCUCGa----CUAGUGCUa--UAa------GCGUCCG- -5' |
|||||||
| 8427 | 3' | -50.3 | NC_002166.1 | + | 449 | 0.69 | 0.749599 |
|
Target: 5'- -gGAGUgGAUCugGAgg-UCGCGGcGCu -3' miRNA: 3'- ugCUCGaCUAGugCUauaAGCGUC-CG- -5' |
|||||||
| 8427 | 3' | -50.3 | NC_002166.1 | + | 37854 | 0.73 | 0.520228 |
|
Target: 5'- gAUGA-UUGAUCGCGGUgauAUUCGuCAGGCa -3' miRNA: 3'- -UGCUcGACUAGUGCUA---UAAGC-GUCCG- -5' |
|||||||
| 8427 | 3' | -50.3 | NC_002166.1 | + | 5289 | 0.84 | 0.113547 |
|
Target: 5'- gACGAGCUGAUCACGcUGUaCGCccAGGCc -3' miRNA: 3'- -UGCUCGACUAGUGCuAUAaGCG--UCCG- -5' |
|||||||
| 8427 | 3' | -50.3 | NC_002166.1 | + | 16055 | 1.13 | 0.001139 |
|
Target: 5'- aACGAGCUGAUCACGAUAUUCGCAGGCg -3' miRNA: 3'- -UGCUCGACUAGUGCUAUAAGCGUCCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home