miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8429 3' -50.1 NC_002166.1 + 39283 0.66 0.903647
Target:  5'- gCGcGUCAGGUuuaagGUGCUGAuggaUUuuGUCu -3'
miRNA:   3'- -GC-CAGUCCGa----CAUGACUua--AAggCAG- -5'
8429 3' -50.1 NC_002166.1 + 34522 0.66 0.896331
Target:  5'- gCGGUCAGaagcuGCaUGUGCUGGAagUUCaCGUg -3'
miRNA:   3'- -GCCAGUC-----CG-ACAUGACUUa-AAG-GCAg -5'
8429 3' -50.1 NC_002166.1 + 11161 0.68 0.807863
Target:  5'- gCGG-CGGGCgccACUGAAacgCCGUCa -3'
miRNA:   3'- -GCCaGUCCGacaUGACUUaaaGGCAG- -5'
8429 3' -50.1 NC_002166.1 + 14659 0.71 0.640895
Target:  5'- cCGGUCAcGCUgGUAUUGAGUa-CCGUCu -3'
miRNA:   3'- -GCCAGUcCGA-CAUGACUUAaaGGCAG- -5'
8429 3' -50.1 NC_002166.1 + 16439 1.11 0.001778
Target:  5'- cCGGUCAGGCUGUACUGAAUUUCCGUCu -3'
miRNA:   3'- -GCCAGUCCGACAUGACUUAAAGGCAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.