Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8438 | 3' | -54.6 | NC_002166.1 | + | 8601 | 1.15 | 0.000277 |
Target: 5'- cGCUGCAGCUGCCAUGACCGGAUUCGCa -3' miRNA: 3'- -CGACGUCGACGGUACUGGCCUAAGCG- -5' |
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8438 | 3' | -54.6 | NC_002166.1 | + | 7078 | 0.66 | 0.650447 |
Target: 5'- cGCUGCGGgaUGCCAuUGAgCCGcacgCGCa -3' miRNA: 3'- -CGACGUCg-ACGGU-ACU-GGCcuaaGCG- -5' |
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8438 | 3' | -54.6 | NC_002166.1 | + | 10176 | 0.66 | 0.627747 |
Target: 5'- cGCUGCAGuCUGaCUggGUGACUGG---CGCc -3' miRNA: 3'- -CGACGUC-GAC-GG--UACUGGCCuaaGCG- -5' |
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8438 | 3' | -54.6 | NC_002166.1 | + | 13321 | 0.67 | 0.582478 |
Target: 5'- aCUGCuGCUGUguUGACUGGAccCGg -3' miRNA: 3'- cGACGuCGACGguACUGGCCUaaGCg -5' |
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8438 | 3' | -54.6 | NC_002166.1 | + | 25622 | 0.67 | 0.571246 |
Target: 5'- uGCaaggGCGGUUGCUguAUGACUGuuUUCGCc -3' miRNA: 3'- -CGa---CGUCGACGG--UACUGGCcuAAGCG- -5' |
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8438 | 3' | -54.6 | NC_002166.1 | + | 12141 | 0.71 | 0.375709 |
Target: 5'- -aUGCAGCUGCUgagGACUGGGguacggugaUCGCc -3' miRNA: 3'- cgACGUCGACGGua-CUGGCCUa--------AGCG- -5' |
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8438 | 3' | -54.6 | NC_002166.1 | + | 13356 | 0.74 | 0.249889 |
Target: 5'- cGCUGCuuucGCUGCUGguggauUGACgGGGUUUGCu -3' miRNA: 3'- -CGACGu---CGACGGU------ACUGgCCUAAGCG- -5' |
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8438 | 3' | -54.6 | NC_002166.1 | + | 21264 | 0.78 | 0.135684 |
Target: 5'- uGCUGUgcgGGUUGCUGUuACCGGAUUCGUa -3' miRNA: 3'- -CGACG---UCGACGGUAcUGGCCUAAGCG- -5' |
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8438 | 3' | -54.6 | NC_002166.1 | + | 2157 | 0.66 | 0.6391 |
Target: 5'- aCUGCAGCcuUGCCcaccaGCCGuuauuGGUUCGCa -3' miRNA: 3'- cGACGUCG--ACGGuac--UGGC-----CUAAGCG- -5' |
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8438 | 3' | -54.6 | NC_002166.1 | + | 5972 | 0.67 | 0.608461 |
Target: 5'- uCUGCAGUUucaucuaguucaccaGCCAgcGACUGGAUaaugacaUCGCa -3' miRNA: 3'- cGACGUCGA---------------CGGUa-CUGGCCUA-------AGCG- -5' |
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8438 | 3' | -54.6 | NC_002166.1 | + | 17433 | 0.68 | 0.537904 |
Target: 5'- cGCUGUuaccGGCUGCCGUGGugaCGGcgaaGCg -3' miRNA: 3'- -CGACG----UCGACGGUACUg--GCCuaagCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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