Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8445 | 3' | -50.2 | NC_002166.1 | + | 10973 | 0.66 | 0.893407 |
Target: 5'- aCGGAUucAGCaGGUuuc-CGGCGACGGg -3' miRNA: 3'- -GUCUAu-UUG-CCGuauuGCCGCUGCCa -5' |
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8445 | 3' | -50.2 | NC_002166.1 | + | 40289 | 0.66 | 0.869417 |
Target: 5'- aCAGA-GAAUGGagaagAGCGGCG-CGGUa -3' miRNA: 3'- -GUCUaUUUGCCgua--UUGCCGCuGCCA- -5' |
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8445 | 3' | -50.2 | NC_002166.1 | + | 5660 | 0.68 | 0.798127 |
Target: 5'- aGGAUcAGCGGCAgagagcagcuuucaGGCGGCG-CGGa -3' miRNA: 3'- gUCUAuUUGCCGUa-------------UUGCCGCuGCCa -5' |
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8445 | 3' | -50.2 | NC_002166.1 | + | 21996 | 0.68 | 0.794018 |
Target: 5'- aAGAaaAAGCcGCAUugauGCGGCGAUGGUa -3' miRNA: 3'- gUCUa-UUUGcCGUAu---UGCCGCUGCCA- -5' |
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8445 | 3' | -50.2 | NC_002166.1 | + | 1416 | 0.69 | 0.717959 |
Target: 5'- gAGAUAAACGGCGauACGGUaGACa-- -3' miRNA: 3'- gUCUAUUUGCCGUauUGCCG-CUGcca -5' |
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8445 | 3' | -50.2 | NC_002166.1 | + | 4675 | 0.71 | 0.613912 |
Target: 5'- aAGGaAGAgGGCcagcugcugAACGGCGACGGUa -3' miRNA: 3'- gUCUaUUUgCCGua-------UUGCCGCUGCCA- -5' |
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8445 | 3' | -50.2 | NC_002166.1 | + | 5446 | 0.71 | 0.602281 |
Target: 5'- gCAGA---ACGGCGcccuUAACGGCGGCaGGa -3' miRNA: 3'- -GUCUauuUGCCGU----AUUGCCGCUG-CCa -5' |
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8445 | 3' | -50.2 | NC_002166.1 | + | 38298 | 0.72 | 0.544761 |
Target: 5'- cCGGAgccAGCGGCAUG--GGCGAUGGa -3' miRNA: 3'- -GUCUau-UUGCCGUAUugCCGCUGCCa -5' |
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8445 | 3' | -50.2 | NC_002166.1 | + | 16883 | 0.73 | 0.511093 |
Target: 5'- --uAUGGACGGCAUGACGgGCGG-GGUg -3' miRNA: 3'- gucUAUUUGCCGUAUUGC-CGCUgCCA- -5' |
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8445 | 3' | -50.2 | NC_002166.1 | + | 14569 | 0.75 | 0.396504 |
Target: 5'- gCAGAcGGACGGCGgcgcAUGGCaGACGGUa -3' miRNA: 3'- -GUCUaUUUGCCGUau--UGCCG-CUGCCA- -5' |
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8445 | 3' | -50.2 | NC_002166.1 | + | 40552 | 0.82 | 0.153477 |
Target: 5'- aCAGGUAGAcaaacauuCGGCAUAgcGCGGCGGCGGc -3' miRNA: 3'- -GUCUAUUU--------GCCGUAU--UGCCGCUGCCa -5' |
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8445 | 3' | -50.2 | NC_002166.1 | + | 17146 | 1.08 | 0.002622 |
Target: 5'- gCAGAUAAACGGCAUAACGGCGACGGUg -3' miRNA: 3'- -GUCUAUUUGCCGUAUUGCCGCUGCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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