miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8445 5' -54 NC_002166.1 + 13995 0.66 0.682083
Target:  5'- cGUACCagagUgCGCCAguguccCACCACUGGCGg- -3'
miRNA:   3'- -UAUGG----AgGCGGUa-----GUGGUGAUUGCga -5'
8445 5' -54 NC_002166.1 + 5751 0.66 0.67066
Target:  5'- uUGCCUgCGCCGUUuCCGCgc-CGCc -3'
miRNA:   3'- uAUGGAgGCGGUAGuGGUGauuGCGa -5'
8445 5' -54 NC_002166.1 + 18250 0.67 0.624689
Target:  5'- uAUAUUUCCGCCGUUccgguaagauAUUACUGGCGUg -3'
miRNA:   3'- -UAUGGAGGCGGUAG----------UGGUGAUUGCGa -5'
8445 5' -54 NC_002166.1 + 17289 0.67 0.613185
Target:  5'- uGUACaUCgCGCUgagGUCGCCAUUAACGUUg -3'
miRNA:   3'- -UAUGgAG-GCGG---UAGUGGUGAUUGCGA- -5'
8445 5' -54 NC_002166.1 + 10627 0.67 0.590243
Target:  5'- uAUGCCaCUGaCCcgCGCCGCUGACGg- -3'
miRNA:   3'- -UAUGGaGGC-GGuaGUGGUGAUUGCga -5'
8445 5' -54 NC_002166.1 + 1685 0.68 0.544896
Target:  5'- uUACCUCgauaGCUuuUgACCGCUGGCGCa -3'
miRNA:   3'- uAUGGAGg---CGGu-AgUGGUGAUUGCGa -5'
8445 5' -54 NC_002166.1 + 17361 0.68 0.544896
Target:  5'- ---gCUUCGCCGUCACCACggcaGCc -3'
miRNA:   3'- uaugGAGGCGGUAGUGGUGauugCGa -5'
8445 5' -54 NC_002166.1 + 24656 0.68 0.522635
Target:  5'- -cGCCUgCGUaAUUACCGCUcACGCUa -3'
miRNA:   3'- uaUGGAgGCGgUAGUGGUGAuUGCGA- -5'
8445 5' -54 NC_002166.1 + 21106 0.68 0.522635
Target:  5'- -gGCUaaacUCGCCAUU-CCACUAACGCUa -3'
miRNA:   3'- uaUGGa---GGCGGUAGuGGUGAUUGCGA- -5'
8445 5' -54 NC_002166.1 + 3223 0.69 0.479247
Target:  5'- -aACCUcCCGCCAUUGCCGg-GugGCg -3'
miRNA:   3'- uaUGGA-GGCGGUAGUGGUgaUugCGa -5'
8445 5' -54 NC_002166.1 + 17180 1.05 0.001415
Target:  5'- aAUACCUCCGCCAUCACCACUAACGCUc -3'
miRNA:   3'- -UAUGGAGGCGGUAGUGGUGAUUGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.