Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8445 | 5' | -54 | NC_002166.1 | + | 17180 | 1.05 | 0.001415 |
Target: 5'- aAUACCUCCGCCAUCACCACUAACGCUc -3' miRNA: 3'- -UAUGGAGGCGGUAGUGGUGAUUGCGA- -5' |
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8445 | 5' | -54 | NC_002166.1 | + | 3223 | 0.69 | 0.479247 |
Target: 5'- -aACCUcCCGCCAUUGCCGg-GugGCg -3' miRNA: 3'- uaUGGA-GGCGGUAGUGGUgaUugCGa -5' |
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8445 | 5' | -54 | NC_002166.1 | + | 24656 | 0.68 | 0.522635 |
Target: 5'- -cGCCUgCGUaAUUACCGCUcACGCUa -3' miRNA: 3'- uaUGGAgGCGgUAGUGGUGAuUGCGA- -5' |
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8445 | 5' | -54 | NC_002166.1 | + | 21106 | 0.68 | 0.522635 |
Target: 5'- -gGCUaaacUCGCCAUU-CCACUAACGCUa -3' miRNA: 3'- uaUGGa---GGCGGUAGuGGUGAUUGCGA- -5' |
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8445 | 5' | -54 | NC_002166.1 | + | 17361 | 0.68 | 0.544896 |
Target: 5'- ---gCUUCGCCGUCACCACggcaGCc -3' miRNA: 3'- uaugGAGGCGGUAGUGGUGauugCGa -5' |
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8445 | 5' | -54 | NC_002166.1 | + | 1685 | 0.68 | 0.544896 |
Target: 5'- uUACCUCgauaGCUuuUgACCGCUGGCGCa -3' miRNA: 3'- uAUGGAGg---CGGu-AgUGGUGAUUGCGa -5' |
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8445 | 5' | -54 | NC_002166.1 | + | 10627 | 0.67 | 0.590243 |
Target: 5'- uAUGCCaCUGaCCcgCGCCGCUGACGg- -3' miRNA: 3'- -UAUGGaGGC-GGuaGUGGUGAUUGCga -5' |
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8445 | 5' | -54 | NC_002166.1 | + | 17289 | 0.67 | 0.613185 |
Target: 5'- uGUACaUCgCGCUgagGUCGCCAUUAACGUUg -3' miRNA: 3'- -UAUGgAG-GCGG---UAGUGGUGAUUGCGA- -5' |
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8445 | 5' | -54 | NC_002166.1 | + | 18250 | 0.67 | 0.624689 |
Target: 5'- uAUAUUUCCGCCGUUccgguaagauAUUACUGGCGUg -3' miRNA: 3'- -UAUGGAGGCGGUAG----------UGGUGAUUGCGa -5' |
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8445 | 5' | -54 | NC_002166.1 | + | 5751 | 0.66 | 0.67066 |
Target: 5'- uUGCCUgCGCCGUUuCCGCgc-CGCc -3' miRNA: 3'- uAUGGAgGCGGUAGuGGUGauuGCGa -5' |
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8445 | 5' | -54 | NC_002166.1 | + | 13995 | 0.66 | 0.682083 |
Target: 5'- cGUACCagagUgCGCCAguguccCACCACUGGCGg- -3' miRNA: 3'- -UAUGG----AgGCGGUa-----GUGGUGAUUGCga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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