miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
845 3' -59.8 NC_000898.1 + 87035 0.67 0.679755
Target:  5'- -cGCGGcGCCUUUcuccucgaucguaGGUAGAGUCUCCAu -3'
miRNA:   3'- guCGUCuCGGAGG-------------UCGUCUCGGAGGU- -5'
845 3' -59.8 NC_000898.1 + 129124 0.7 0.454385
Target:  5'- nGGCAGGGCUUCCAGCAaAGCUUn-- -3'
miRNA:   3'- gUCGUCUCGGAGGUCGUcUCGGAggu -5'
845 3' -59.8 NC_000898.1 + 129195 0.77 0.191544
Target:  5'- nAGCAGGGCCUCCAG-AGGGCCUn-- -3'
miRNA:   3'- gUCGUCUCGGAGGUCgUCUCGGAggu -5'
845 3' -59.8 NC_000898.1 + 129579 0.85 0.050821
Target:  5'- nAGCAGGGCCUCCAGCAGAGUCUn-- -3'
miRNA:   3'- gUCGUCUCGGAGGUCGUCUCGGAggu -5'
845 3' -59.8 NC_000898.1 + 129243 0.87 0.039885
Target:  5'- nAGCAGAGCCUCCAGCAGAGCUUn-- -3'
miRNA:   3'- gUCGUCUCGGAGGUCGUCUCGGAggu -5'
845 3' -59.8 NC_000898.1 + 129375 0.92 0.016712
Target:  5'- nAGCAGAGCUUCCAGCAGAGUCUCUAg -3'
miRNA:   3'- gUCGUCUCGGAGGUCGUCUCGGAGGU- -5'
845 3' -59.8 NC_000898.1 + 129459 0.92 0.016712
Target:  5'- nAGCAGAGCUUCCAGCAGAGUCUCUAg -3'
miRNA:   3'- gUCGUCUCGGAGGUCGUCUCGGAGGU- -5'
845 3' -59.8 NC_000898.1 + 129148 1.01 0.004014
Target:  5'- nAGCAGGGCCUCCAGCAGGGCCUCCGg -3'
miRNA:   3'- gUCGUCUCGGAGGUCGUCUCGGAGGU- -5'
845 3' -59.8 NC_000898.1 + 129604 1.02 0.003595
Target:  5'- cCAGCAGGGCCUCCAGCAGAGCCUUCAg -3'
miRNA:   3'- -GUCGUCUCGGAGGUCGUCUCGGAGGU- -5'
845 3' -59.8 NC_000898.1 + 129399 1.02 0.003311
Target:  5'- nAGCAGGGCCUCCAGCAGGGCCUCCAg -3'
miRNA:   3'- gUCGUCUCGGAGGUCGUCUCGGAGGU- -5'
845 3' -59.8 NC_000898.1 + 129484 1.03 0.003048
Target:  5'- cCGGCAGGGCCUCCGGCAGGGCCUCCAg -3'
miRNA:   3'- -GUCGUCUCGGAGGUCGUCUCGGAGGU- -5'
845 3' -59.8 NC_000898.1 + 129173 1.05 0.002074
Target:  5'- cCAGCAGGGCCUCCAGCAGGGCCUCCAg -3'
miRNA:   3'- -GUCGUCUCGGAGGUCGUCUCGGAGGU- -5'
845 3' -59.8 NC_000898.1 + 129520 1.05 0.002074
Target:  5'- cCAGCAGGGCCUCCAGCAGGGCCUCCAg -3'
miRNA:   3'- -GUCGUCUCGGAGGUCGUCUCGGAGGU- -5'
845 3' -59.8 NC_000898.1 + 129424 1.05 0.002074
Target:  5'- cCAGCAGGGCCUCCAGCAGGGCCUCCAg -3'
miRNA:   3'- -GUCGUCUCGGAGGUCGUCUCGGAGGU- -5'
845 3' -59.8 NC_000898.1 + 129304 1.05 0.002074
Target:  5'- cCAGCAGGGCCUCCAGCAGGGCCUCCAg -3'
miRNA:   3'- -GUCGUCUCGGAGGUCGUCUCGGAGGU- -5'
845 3' -59.8 NC_000898.1 + 129639 1.05 0.002017
Target:  5'- nAGCAGAGCCUCCAGCAGAGCCUCCAg -3'
miRNA:   3'- gUCGUCUCGGAGGUCGUCUCGGAGGU- -5'
845 3' -59.8 NC_000898.1 + 129101 1.05 0.001963
Target:  5'- cCAGCAGGGCCUCCAGCAGAGCCUCCGg -3'
miRNA:   3'- -GUCGUCUCGGAGGUCGUCUCGGAGGU- -5'
845 3' -59.8 NC_000898.1 + 129220 1.06 0.001619
Target:  5'- cCAGCAGAGCCUCCAGCAGGGCCUCCAg -3'
miRNA:   3'- -GUCGUCUCGGAGGUCGUCUCGGAGGU- -5'
845 3' -59.8 NC_000898.1 + 129268 1.08 0.001263
Target:  5'- cCAGCAGAGCCUCCAGCAGAGCCUCCAg -3'
miRNA:   3'- -GUCGUCUCGGAGGUCGUCUCGGAGGU- -5'
845 3' -59.8 NC_000898.1 + 129340 1.08 0.001263
Target:  5'- cCAGCAGAGCCUCCAGCAGAGCCUCCAg -3'
miRNA:   3'- -GUCGUCUCGGAGGUCGUCUCGGAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.